PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00269.1_g00024.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 132aa    MW: 15136.6 Da    PI: 5.2356
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00269.1_g00024.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH18.92.8e-061861650
                             HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-.STCHHHHHHHHHH CS
                      HLH  6 nerErrRRdriNsafeeLrellPk.askapskK.lsKaeiLekAveY 50
                               rE+ RRd++N+ f eL   l + +   ++ +  +Ka+i   ++e 
  Rsa1.0_00269.1_g00024.1 18 RDREKIRRDELNDQFLELGNALDPnR---QALRvSDKASIIIDTIET 61
                             579*******************9856...8888899**999999986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.7311265IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-91581IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.6E-72083IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 132 aa     Download sequence    Send to blast
MISFAYFHLL LTGKFKRRDR EKIRRDELND QFLELGNALD PNRQALRVSD KASIIIDTIE  60
TLNDFMIQVD RLKAEYVTLS QDSCEVLMLI DLTSAMVLLL LDPSQVKLCE TVFNNLIEKV  120
LSKSTGCRLS PN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013596284.13e-27PREDICTED: transcription factor bHLH11
RefseqXP_013596285.13e-27PREDICTED: transcription factor bHLH11
SwissprotQ8W2F21e-23BH011_ARATH; Transcription factor bHLH11
TrEMBLA0A078C8T73e-27A0A078C8T7_BRANA; BnaC07g45960D protein
TrEMBLA0A0D3DHX83e-27A0A0D3DHX8_BRAOL; Uncharacterized protein
STRINGBra017745.1-P1e-26(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36060.27e-20bHLH family protein