PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00269.1_g00024.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 132aa    MW: 15136.6 Da    PI: 5.2356
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00269.1_g00024.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH18.92.8e-061861650
                             HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-.STCHHHHHHHHHH CS
                      HLH  6 nerErrRRdriNsafeeLrellPk.askapskK.lsKaeiLekAveY 50
                               rE+ RRd++N+ f eL   l + +   ++ +  +Ka+i   ++e 
  Rsa1.0_00269.1_g00024.1 18 RDREKIRRDELNDQFLELGNALDPnR---QALRvSDKASIIIDTIET 61
                             579*******************9856...8888899**999999986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.7311265IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-91581IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.6E-72083IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 132 aa     Download sequence    Send to blast
MISFAYFHLL LTGKFKRRDR EKIRRDELND QFLELGNALD PNRQALRVSD KASIIIDTIE  60
TLNDFMIQVD RLKAEYVTLS QDSCEVLMLI DLTSAMVLLL LDPSQVKLCE TVFNNLIEKV  120
LSKSTGCRLS PN
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00269.1_g00024.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018478868.11e-27PREDICTED: transcription factor bHLH11
SwissprotQ8W2F21e-22BH011_ARATH; Transcription factor bHLH11
TrEMBLA0A0D3DHX81e-25A0A0D3DHX8_BRAOL; Uncharacterized protein
TrEMBLA0A3P6F6D01e-25A0A3P6F6D0_BRAOL; Uncharacterized protein
STRINGBo7g117760.12e-26(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36060.27e-20bHLH family protein
Publications ? help Back to Top
  1. Kawabe A,Hansson B,Forrest A,Hagenblad J,Charlesworth D
    Comparative gene mapping in Arabidopsis lyrata chromosomes 6 and 7 and A. thaliana chromosome IV: evolutionary history, rearrangements and local recombination rates.
    Genet. Res., 2006. 88(1): p. 45-56
    [PMID:17014743]
  2. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  4. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]
  5. Tanabe N, et al.
    The basic helix-loop-helix transcription factor, bHLH11 functions in the iron-uptake system in Arabidopsis thaliana.
    J. Plant Res., 2019. 132(1): p. 93-105
    [PMID:30417276]