PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00264.1_g00010.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 353aa    MW: 38893.4 Da    PI: 6.1621
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00264.1_g00010.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.74.9e-14164210354
                              HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                      HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                              ++h+e+ErrRR+riN+ +++Lr++lP+      +K +Ka+ L ++++++k+L
  Rsa1.0_00264.1_g00010.1 164 KSHSEAERRRRERINNHLAKLRSILPNT-----TKTDKASLLAEVIQHVKEL 210
                              79*************************9.....8****************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.85161210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-11164210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-14165219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.8E-14165220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-12167216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.13E-5174213No hitNo description
Gene3DG3DSA:3.30.70.2605.0E-4250305No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MCAKKEEVES SGAMNNIQNY QSDLFFHQLI SHNHHQDPSQ SESFGGPSNN AGSGSTIFSQ  60
DTVSPIWPTL VQPPFDPFPP PSQASFYGSF FHRSRAHHQG LQFGYEGFGG ATPATHHHHE  120
QLRILSEALG PVVQAGSGPF GLQAELGKMT AQEIMDAKAL AASKSHSEAE RRRRERINNH  180
LAKLRSILPN TTKTDKASLL AEVIQHVKEL KRETSVISET NLVPTESDEL TVAFTEEEET  240
GDGRFVIKAS LCCEDRSDLL PDMIKTLKAM RLKTVKAEIT TVGGRVKNVL FVTGDEGSGE  300
EEMEEYCIGT IEEALKAVMD KSNVEESSSS GNAKRQRMSS HNAITIVEQQ HHR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1169174ERRRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1229830.0AY122983.1 Arabidopsis thaliana putative DNA-binding protein (At1g68810) mRNA, complete cds.
GenBankAY0721610.0AY072161.1 Arabidopsis thaliana putative DNA-binding protein (At1g68810) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013649337.10.0PREDICTED: transcription factor bHLH30
SwissprotQ9S7Y10.0BH030_ARATH; Transcription factor bHLH30
TrEMBLA0A078E5W30.0A0A078E5W3_BRANA; BnaA07g27420D protein
STRINGBra004338.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM70482843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.10.0bHLH family protein