PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00261.1_g00013.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 231aa    MW: 25286.8 Da    PI: 10.077
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00261.1_g00013.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.31.3e-08130170954
                              HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                      HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                               r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  Rsa1.0_00261.1_g00013.1 130 ARHRRERISERIRILQRLVPGG-----TKMDTASMLDEAIHYVKFL 170
                              699*****************87.....8****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.434121170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.3E-14122180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.37E-15125181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.3E-14127176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.4E-6131170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.01E-6144175No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010500Biological Processtransmitting tissue development
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048462Biological Processcarpel formation
GO:2000012Biological Processregulation of auxin polar transport
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MDSDIMNMMQ QMEKLPEFCN TNPFFIDHNN NNNTYPFLSN SNHNHPDSMT YEPGFRYGSG  60
LLANPSSLSP TTAYSSVLQD KRNNSTNMAA MREMIFRIAV MQPIHIDPES VKPPKRRNVR  120
ISKDPQSVAA RHRRERISER IRILQRLVPG GTKMDTASML DEAIHYVKFL KKQVQSLEEQ  180
AVVNSGGGGR VLVGGGGVTG AVSGGGGGGV VMKGCGAIGT HQMVGNAQIL R
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1187195GGRVLVGGG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009115828.11e-127PREDICTED: transcription factor HEC1-like
SwissprotQ9FHA72e-98HEC1_ARATH; Transcription factor HEC1
TrEMBLA0A078JFU71e-127A0A078JFU7_BRANA; BnaAnng19120D protein
TrEMBLM4F6U11e-127M4F6U1_BRARP; Uncharacterized protein
STRINGBra036801.1-P1e-126(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15592791
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67060.12e-86bHLH family protein