PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00260.1_g00010.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 627aa    MW: 69789.9 Da    PI: 6.9644
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00260.1_g00010.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.44.4e-12436483355
                              HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                              ++h   E++RR+++N++f  Lr+++P+ +      K +K++iL  ++ Y+++L+
  Rsa1.0_00260.1_g00010.1 436 ANHAVLEKKRREKLNERFLILRSIIPSiN------KSDKVSILDDTIGYLQELE 483
                              5899***********************77......99**************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.9E-4914203IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088815.878433482IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.89E-17435500IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-9436483IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.7E-17437500IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.09E-12437487No hitNo description
SMARTSM003531.1E-13439488IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009957Biological Processepidermal cell fate specification
GO:0010091Biological Processtrichome branching
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 627 aa     Download sequence    Send to blast
MVMGQNITSV PENLKKQLAV SIRSIQWSYA IFWSVSASQP GVLEWGEGYY NGDIKTRKTI  60
QASEIKADQL GLRRSEQLRE LFESLSIAES SSTGTAVGSQ VTRRASAAAL SPEDLADTEW  120
YYLVCMSFVF KIGEGMPGRT FANDEPIWLC NADSKVFGRS LLAKSASVNT VICFPFLGGV  180
VEIGTTEHIA EDMNVIQCVK KSFLEAPASH ATISQQRSDY HIDKVVDPQH ILGDEIYAPM  240
FGNRPFQATS PSRTTNGFDP EHDQLAEDHD SFMAEGINSQ VQSWQHMDDE LSNCVHQSLN  300
SSDCVSQTFA EAGARRVSCG ARKGRVQRLG HFQEQHKNVK MLSFDPRNDD VHYQSVISTI  360
FKTSHQLILG PQFRNCDKRS SFTRWKKPSS SSSSFGTASV VPPSQGMLKK IIFEVPRVHQ  420
KEKLMLDSPG AGDETANHAV LEKKRREKLN ERFLILRSII PSINKSDKVS ILDDTIGYLQ  480
ELEKRVQELE SCRESTDTET RGTTTMKRKK PYDAGERTSA NCTNNEIGYG KRTHVGQAEP  540
TETSLTDNLR ISPFGNEVVI EMRCVWREGV LLEIMDVISN LNLDSHSVQS STGDGLLCLT  600
VSCKHKGSKI ATPGMIKEAL KKVAWIC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yz6_A4e-14122037192Transcription factor MYC3
4rs9_A4e-14122037192Transcription factor MYC3
4rqw_B4e-14122037192Transcription factor MYC3
4rqw_A4e-14122037192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1442447KKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009140081.10.0PREDICTED: transcription factor GLABRA 3 isoform X1
RefseqXP_009140082.10.0PREDICTED: transcription factor GLABRA 3 isoform X2
SwissprotQ9FN690.0GL3_ARATH; Transcription factor GLABRA 3
TrEMBLM4E9Q20.0M4E9Q2_BRARP; Uncharacterized protein
STRINGBra025508.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25922867
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41315.10.0bHLH family protein