PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00215.1_g00019.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 254aa    MW: 28849.4 Da    PI: 6.8679
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00215.1_g00019.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.34.2e-111792191055
                              HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              r+RR++iN+++ +L+ l+P+      +K++ +++Le+Av+Y+k Lq
  Rsa1.0_00215.1_g00019.1 179 RKRREKINERLKTLQNLVPNG-----TKVDISTMLEEAVHYVKFLQ 219
                              9******************97.....8******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.123169218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-14171233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-13174229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.0E-12175224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.03E-11178223No hitNo description
PfamPF000101.9E-8179219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0016049Biological Processcell growth
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048766Biological Processroot hair initiation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MDVFVDGELE SLLGMFNFDQ CSSSKEERPQ DEMLSLSSLY NGHLHHQNNV LSSDQHAFLI  60
PDMFSFGVMP GGNLPTMLDS WDQNHIPETA ILKRKLHNVE NVHNTNSKRD VTRQELVKAK  120
KKQRVSLESN SADESNTNWR DGQSNSNSSD DEKASVTSVK GKTRATKGTA TDPQSLYARK  180
RREKINERLK TLQNLVPNGT KVDISTMLEE AVHYVKFLQL QIKLLSSDEL WMYAPLAYNG  240
LDMGFHHNLL SRLM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1178183RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0854360.0AY085436.1 Arabidopsis thaliana clone 151587 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013682015.11e-176PREDICTED: transcription factor bHLH54
SwissprotQ8LEG11e-158BH054_ARATH; Transcription factor bHLH54
TrEMBLM4D3681e-176M4D368_BRARP; Uncharacterized protein
STRINGBra010921.1-P1e-175(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41322257
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27740.11e-148root hair defective 6-like 4