PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00215.1_g00019.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 254aa    MW: 28849.4 Da    PI: 6.8679
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00215.1_g00019.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.34.2e-111792191055
                              HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              r+RR++iN+++ +L+ l+P+      +K++ +++Le+Av+Y+k Lq
  Rsa1.0_00215.1_g00019.1 179 RKRREKINERLKTLQNLVPNG-----TKVDISTMLEEAVHYVKFLQ 219
                              9******************97.....8******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.123169218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-14171233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-13174229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.0E-12175224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.03E-11178223No hitNo description
PfamPF000101.9E-8179219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0016049Biological Processcell growth
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048766Biological Processroot hair initiation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MDVFVDGELE SLLGMFNFDQ CSSSKEERPQ DEMLSLSSLY NGHLHHQNNV LSSDQHAFLI  60
PDMFSFGVMP GGNLPTMLDS WDQNHIPETA ILKRKLHNVE NVHNTNSKRD VTRQELVKAK  120
KKQRVSLESN SADESNTNWR DGQSNSNSSD DEKASVTSVK GKTRATKGTA TDPQSLYARK  180
RREKINERLK TLQNLVPNGT KVDISTMLEE AVHYVKFLQL QIKLLSSDEL WMYAPLAYNG  240
LDMGFHHNLL SRLM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1178183RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00215.1_g00019.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0854360.0AY085436.1 Arabidopsis thaliana clone 151587 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018450222.10.0PREDICTED: transcription factor bHLH54
SwissprotQ8LEG11e-157BH054_ARATH; Transcription factor bHLH54
TrEMBLA0A397YD471e-175A0A397YD47_BRACM; Uncharacterized protein
STRINGBra010921.1-P1e-175(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41322257
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27740.11e-148root hair defective 6-like 4
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Han Y, et al.
    Altered expression of TaRSL4 gene by genome interplay shapes root hair length in allopolyploid wheat.
    New Phytol., 2016. 209(2): p. 721-32
    [PMID:26334764]
  3. Datta S,Prescott H,Dolan L
    Intensity of a pulse of RSL4 transcription factor synthesis determines Arabidopsis root hair cell size.
    Nat Plants, 2015. 1: p. 15138
    [PMID:27251390]
  4. Song L, et al.
    The Molecular Mechanism of Ethylene-Mediated Root Hair Development Induced by Phosphate Starvation.
    PLoS Genet., 2016. 12(7): p. e1006194
    [PMID:27427911]
  5. Vijayakumar P,Datta S,Dolan L
    ROOT HAIR DEFECTIVE SIX-LIKE4 (RSL4) promotes root hair elongation by transcriptionally regulating the expression of genes required for cell growth.
    New Phytol., 2016. 212(4): p. 944-953
    [PMID:27452638]
  6. Hwang Y,Choi HS,Cho HM,Cho HT
    Tracheophytes Contain Conserved Orthologs of a Basic Helix-Loop-Helix Transcription Factor That Modulate ROOT HAIR SPECIFIC Genes.
    Plant Cell, 2017. 29(1): p. 39-53
    [PMID:28087829]
  7. Marzol E,Borassi C,Denita Juárez SP,Mangano S,Estevez JM
    RSL4 Takes Control: Multiple Signals, One Transcription Factor.
    Trends Plant Sci., 2017. 22(7): p. 553-555
    [PMID:28487046]
  8. Stanley CE, et al.
    Dual-flow-RootChip reveals local adaptations of roots towards environmental asymmetry at the physiological and genetic levels.
    New Phytol., 2018. 217(3): p. 1357-1369
    [PMID:29125191]
  9. Feng Y, et al.
    Ethylene promotes root hair growth through coordinated EIN3/EIL1 and RHD6/RSL1 activity in Arabidopsis.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(52): p. 13834-13839
    [PMID:29233944]
  10. Shibata M, et al.
    GTL1 and DF1 regulate root hair growth through transcriptional repression of ROOT HAIR DEFECTIVE 6-LIKE 4 in Arabidopsis.
    Development, 2018.
    [PMID:29439132]