PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00215.1_g00013.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 443aa    MW: 48648.8 Da    PI: 6.9624
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00215.1_g00013.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.28.3e-053243621255
                              HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              R +++ ++++ L++l+ +      +K + a++L +A+ YIk Lq
  Rsa1.0_00215.1_g00013.1 324 RKEKLGDRIAALQQLVSPF-----GKTDTASVLMEAIGYIKFLQ 362
                              7788899*********998.....8******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.074312361IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.50E-5322366No hitNo description
SuperFamilySSF474596.67E-11322375IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-8326369IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MDSTNLHQLQ DQLQLVGSSS SSSSLDNNSN PSCYEASSVH QWSPGGISLN SVSLSHNFNN  60
EMLNTRDQNN NNNNNNRTSE CMSLSNIHNH SLIQQDFPLQ WTHNESSYHH HEGLHKVKEE  120
LSSATTSDHQ QGMLRFTDML NSPVVTNYLK INEHKDYTEK LLLNTISSGF PINGDYSSSL  180
PSSSSSSSPS SQSHRGSFSQ IYPSVNISSL SESQKISNIP RPFDMNMQVL DGRLFEGNVL  240
VPPLNSQEIR GNFTPFGLPF HHHLQQTLHH PSSSPGHQME IYSNEPQASE GKRHNFVMAP  300
KAGETASKKP RVQSRSSCPP FKVRKEKLGD RIAALQQLVS PFGKTDTASV LMEAIGYIKF  360
LQSQIETLSV PYMRASRNRP GKASQLGSLP QEGSEEETRD LRSRGLCLVP LSCMTYVTGD  420
GGDGGGSLGS GFWPTPTGFG GGT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895550.0AC189555.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH006E24, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013623171.10.0PREDICTED: transcription factor bHLH110 isoform X1
SwissprotQ9SFZ30.0BH110_ARATH; Transcription factor bHLH110
TrEMBLA0A0D3BIG70.0A0A0D3BIG7_BRAOL; Uncharacterized protein
STRINGBra010925.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM93512533
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27660.10.0bHLH family protein