PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00197.1_g00013.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 507aa    MW: 55227.5 Da    PI: 5.6784
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00197.1_g00013.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH52.68.5e-17328374455
                              HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                               hn  ErrRRdriN+++  L+el+P++      K++Ka++L +A+eY+ksLq
  Rsa1.0_00197.1_g00013.1 328 VHNLSERRRRDRINEKMRALQELIPNC-----NKVDKASMLDEAIEYLKSLQ 374
                              6*************************8.....6******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000836.37E-18320378No hitNo description
Gene3DG3DSA:4.10.280.105.7E-21321382IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.76E-21321387IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.584324373IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.5E-14328374IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.3E-18330379IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009704Biological Processde-etiolation
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0031539Biological Processpositive regulation of anthocyanin metabolic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 507 aa     Download sequence    Send to blast
MPLFELFRLT NTKFESAQDN NPSPPVDEVV ELVWENGQIS TQTQSNRSRN IPPPPPPGQE  60
SSSRAREIVN GSKTTMVEEI PMSVPSLMTG LSQDDDLVPW LNPHHQSLDG YCSDFLHDVS  120
PVAVDEQESE DAFPLFQRRD NGNESAPPAD STSLQFNGFQ SHSLYGSGRA RDPPVSQPAK  180
PDPSTSNKPG LINFSHFLRT AASAKTNDSP PGSKEKSPQC PPNVFQTRVL GAKEVLNESV  240
MPKDNQKACL VSEDSNRKDQ ESEKAVVCSS VGSGNSPSES PLKRKHPPDV QDIECHSEDV  300
EGESGDGRKE AAPSRTGMGS KRSRSAEVHN LSERRRRDRI NEKMRALQEL IPNCNKVDKA  360
SMLDEAIEYL KSLQLQVQFM SMASGYYMPP VMFPPGMGHH YQAAAMAMGM GMPYAMGLPD  420
INRGGPSVNN APQFQFPGMQ QPVTMALPRV SAGGLFGSST VEMNKSGDGS TRDLPGTNDQ  480
TTTKSNNGLK PIKRKQASPP DQFCGSS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1332337ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00081ChIP-seqTransfer from AT1G09530Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013693604.10.0PREDICTED: transcription factor PIF3-like
SwissprotO805360.0PIF3_ARATH; Transcription factor PIF3
TrEMBLA0A078JE620.0A0A078JE62_BRANA; BnaA06g37850D protein
STRINGBra020017.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM76652739
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.20.0phytochrome interacting factor 3