PlantTFDB
Plant Transcription Factor Database
v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00193.1_g00014.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 256aa    MW: 27177.3 Da    PI: 6.654
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00193.1_g00014.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.66.2e-051421821055
                              HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              + R +r+ ++++ L++l+ +      +K + a++L +A+ YIk Lq
  Rsa1.0_00193.1_g00014.1 142 KVRKERLGERIAALQQLVSPY-----GKTDAASVLHEAMGYIKFLQ 182
                              678889999*********999.....9******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.877132181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-11137192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.25E-4140186No hitNo description
Gene3DG3DSA:4.10.280.103.6E-7140188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MVEAPGAPSF SELLMLSDGF LSSSEGHHRE ANGGDGGEDS FSFVFSGTNG SKMLCFSGDC  60
QNGDESLFQE PSLPSGVSLS DPSSCTVDIC KKSSDTCTEE KSTKPTNKKR TGSGNGQNMD  120
HNRKPSKKCQ KNQDKSSVGI AKVRKERLGE RIAALQQLVS PYGKTDAASV LHEAMGYIKF  180
LQDQIQVLCS PYLINYSLDG GAVTGDITPG KKARDLRSRG LCLVPVSSTV NVENSNGADL  240
WSPATASIGH TMSPSQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00193.1_g00014.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018487094.10.0PREDICTED: transcription factor bHLH113 isoform X1
SwissprotQ9LT671e-134BH113_ARATH; Transcription factor bHLH113
TrEMBLA0A078I5R41e-174A0A078I5R4_BRANA; BnaA05g20570D protein
TrEMBLA0A397ZLA21e-174A0A397ZLA2_BRACM; Uncharacterized protein
TrEMBLM4E0Y11e-174M4E0Y1_BRARP; Uncharacterized protein
STRINGBra022428.1-P1e-175(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM74022234
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19500.11e-136bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]