PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00179.1_g00035.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family B3
Protein Properties Length: 236aa    MW: 27057 Da    PI: 8.2047
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00179.1_g00035.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3106.71.1e-3332138199
                              EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT- CS
                       B3   1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegD 78 
                              f+k ltpsdv+k++rlv+pk++ae++        ++  e+++ l++edesg+sW+++++y+++s++yvltkGW+++vk+++L++gD
  Rsa1.0_00179.1_g00035.1  32 FEKSLTPSDVGKLNRLVIPKQYAEKYlplnngggDMTAEKGMLLSFEDESGKSWKFRYSYWNSSQSYVLTKGWSKYVKDKHLDAGD 117
                              99******************************9978888*********************************************** PP

                              EEEEEE-SS.SEE..EEEEE-S CS
                       B3  79 fvvFkldgr.sefelvvkvfrk 99 
                              +v F+++ r +  +l+++++r+
  Rsa1.0_00179.1_g00035.1 118 VVFFQRH-RfDFHRLFIGWRRR 138
                              *****65.44888899999987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.7E-4028147IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.26E-3130144IPR015300DNA-binding pseudobarrel domain
CDDcd100178.30E-3131129No hitNo description
PfamPF023622.5E-3032138IPR003340B3 DNA binding domain
SMARTSM010194.5E-2532139IPR003340B3 DNA binding domain
PROSITE profilePS5086314.45232139IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MSVDNYSRDI YHNTVSMNHH QNDAVAYRES LFEKSLTPSD VGKLNRLVIP KQYAEKYLPL  60
NNGGGDMTAE KGMLLSFEDE SGKSWKFRYS YWNSSQSYVL TKGWSKYVKD KHLDAGDVVF  120
FQRHRFDFHR LFIGWRRRGE ASYPSAVSAV SQEVHVNTTA YWSGLTTPYR QVHTSTSSYP  180
NIHQEYSQYG AVAETPTVVA RSSRTVRLFG VNLECHGDVV EPPPCPDGYN GQHIYY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A1e-432914611129DNA-binding protein RAV1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013644761.11e-152PREDICTED: B3 domain-containing protein At3g11580-like
RefseqXP_013622680.11e-152PREDICTED: B3 domain-containing protein At3g11580-like
RefseqXP_013648186.11e-152PREDICTED: B3 domain-containing protein At3g11580-like
RefseqXP_013648185.11e-152PREDICTED: B3 domain-containing protein At3g11580-like
RefseqXP_013648184.11e-152PREDICTED: B3 domain-containing protein At3g11580-like
SwissprotQ8RYD31e-127Y3158_ARATH; B3 domain-containing protein At3g11580
TrEMBLA0A078CFS31e-152A0A078CFS3_BRANA; BnaA03g31790D protein
TrEMBLA0A0D3BAS01e-152A0A0D3BAS0_BRAOL; Uncharacterized protein
TrEMBLM4CB321e-152M4CB32_BRARP; Uncharacterized protein
STRINGBra001411.1-P1e-151(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122028100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11580.11e-128B3 family protein