PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00169.1_g00004.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 401aa    MW: 45194.4 Da    PI: 4.7506
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00169.1_g00004.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.12.8e-12194245155
                              CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              +r++h ++Er+RR+++N+ +  Lr+l+P +   + ++ + a+i   A+e++++L+
  Rsa1.0_00169.1_g00004.1 194 QRMTHIAVERNRRKQMNEHLRVLRSLMPGS---YVQRGDQASIIGGAIEFVRELE 245
                              79****************************...9*****************9995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.4E-13192248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.40E-12192249No hitNo description
SuperFamilySSF474592.49E-16193258IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.428193244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-9194245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.4E-9199250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048730.00131327391No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010377Biological Processguard cell fate commitment
GO:0045597Biological Processpositive regulation of cell differentiation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051782Biological Processnegative regulation of cell division
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MAMDKEYSAP NFLGESSGGK DDTSDGMIDY MFNRNLQQEK QSMPQQHQLS PSGFGATPTF  60
DKMSFADVMQ FADFGPKLAL NQTRNQDDQD TGQGMDPVYF LKFPVLNDKI EDHNQTHYLM  120
SQEAGECEGN IGNLFLEEKE NQEDENDNNS VQLRFIGGEE EEDDRENKNV TTKEVKSKRK  180
RARTSKTSEE VESQRMTHIA VERNRRKQMN EHLRVLRSLM PGSYVQRGDQ ASIIGGAIEF  240
VRELEQLLQC LESQKRRRIL GETGNRHLGD MTTTTTTSSP ITSVNNPLII TGNVTESEGG  300
GGLQEETAEN KSCLADVEVK LLGFDAMIKI LSRRRPGQLI KTIAALEDLH LSILHTNITT  360
MEQTVLYSFN VKITSETRFT AEDIASSIQE IFTFIHANTT M
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1194205RMTHIAVERNRR
2254258KRRRI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0289611e-120BT028961.1 Arabidopsis thaliana At3g24140 mRNA, complete cds.
GenBankAB4936311e-120AB493631.1 Arabidopsis thaliana At3g24140 mRNA for hypothetical protein, partial cds, clone: RAAt3g24140.
GenBankAK2213241e-120AK221324.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor, complete cds, clone: RAFL25-14-O10.
GenBankAF4886241e-120AF488624.1 Arabidopsis thaliana clone bHLH097 putative bHLH transcription factor mRNA, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009106201.10.0PREDICTED: transcription factor FAMA-like
RefseqXP_009106193.10.0PREDICTED: transcription factor FAMA-like
SwissprotQ56YJ80.0FAMA_ARATH; Transcription factor FAMA
TrEMBLM4EHU20.0M4EHU2_BRARP; Uncharacterized protein
STRINGBra028357.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM55482649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24140.10.0bHLH family protein