PlantTFDB
Plant Transcription Factor Database
v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00149.1_g00013.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 228aa    MW: 25673.3 Da    PI: 8.3273
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00149.1_g00013.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.14.9e-1174120453
                              HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHH CS
                      HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIks 53 
                              ++  rE++RRdr+N++f eL +++ +    +++K +K++i   A++ +++
  Rsa1.0_00149.1_g00013.1  74 SKACREKQRRDRLNDKFTELSSVMEPG---RAPKTDKVAIISDAIRMVNQ 120
                              5678**********************9...9**************98765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.47470121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.39E-773120No hitNo description
PfamPF000101.3E-874120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.5E-1174143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.5E-676127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.49E-1176148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MVFPENTNWL SDYPLIDGVF SHHQSPTFPW QIHGSAATTV SVEEVDGFLC DSDVIKEPGS  60
KKRIKPESCA GSSSKACREK QRRDRLNDKF TELSSVMEPG RAPKTDKVAI ISDAIRMVNQ  120
ARDEAKRLKD LNSGLLEKIK ELKEEKNELR DEKQKLKIEK ERIEQQLKAA INTSRPCFLP  180
NPPTLSQAQT PGSKLVPFTT YPGFAMWQFM PPAVVDTSQD HVLRPPVA
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00149.1_g00013.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018493058.11e-163PREDICTED: transcription factor bHLH115
SwissprotQ9C6821e-136BH115_ARATH; Transcription factor bHLH115
TrEMBLA0A397ZE541e-143A0A397ZE54_BRACM; Uncharacterized protein
STRINGBra030459.1-P1e-143(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14372890
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51070.11e-124bHLH family protein
Publications ? help Back to Top
  1. Liang G,Zhang H,Li X,Ai Q,Yu D
    bHLH transcription factor bHLH115 regulates iron homeostasis in Arabidopsis thaliana.
    J. Exp. Bot., 2017. 68(7): p. 1743-1755
    [PMID:28369511]