PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00126.1_g00006.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 323aa    MW: 35975 Da    PI: 6.5228
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00126.1_g00006.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.93.3e-12135181455
                              HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                               h  +Er+RR+++N+++  L  llP +     kK +Ka++Le A++++k+Lq
  Rsa1.0_00126.1_g00006.1 135 EHVLAERKRRQKLNERLIALSALLPGL-----KKADKASVLEDAIKHLKKLQ 181
                              5889***********************.....9******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.65131180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.9E-16135194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-15135193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.4E-10135181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.28E-12136185No hitNo description
SMARTSM003538.4E-14137186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007029Biological Processendoplasmic reticulum organization
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MEDSTFTDLM IDTDEYLADD WEQEFPVIPG ETTDHQSTKP GCESEFGFSL IPEIRPTKQM  60
KVNSTSSSSL SSSSSSCGTL TAAQVISFGS QDPKMNVVEA SFNFSNEANM EQNVRSKRKE  120
CGNNGGKREP HLLKEHVLAE RKRRQKLNER LIALSALLPG LKKADKASVL EDAIKHLKKL  180
QERVKKLEEE RGGAMKMDQS VILVKRSQVY VDDDSSSYSS TCSAASPPAS SLDEVSILKQ  240
TMPMIEARVS DRDLLIRIHC EKNRGCLIKI LSSLEKFHLE VVNSFTLPFG SSTLVITILS  300
KMDNKFSRPI EDVVKNIRLA LAE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1139144ERKRRQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013690593.10.0PREDICTED: transcription factor NAI1-like
RefseqXP_013633861.10.0PREDICTED: transcription factor NAI1
RefseqXP_013633859.10.0PREDICTED: transcription factor NAI1
SwissprotQ8S3F11e-151BH020_ARATH; Transcription factor NAI1
TrEMBLA0A078DQR50.0A0A078DQR5_BRANA; BnaC04g35320D protein
TrEMBLA0A0D3C1B30.0A0A0D3C1B3_BRAOL; Uncharacterized protein
STRINGBra030207.1-P1e-179(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM136071726
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22770.11e-150bHLH family protein