PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00117.1_g00009.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 314aa    MW: 35519.6 Da    PI: 4.7418
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00117.1_g00009.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.31.2e-07161207554
                              HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                      HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                              +  rE++ R+ +N++f  L ++l +    + +K +K +iL  A++ +++L
  Rsa1.0_00117.1_g00009.1 161 KAGREKKKREMLNDKFMDLSSVLEPT---RTPKTDKPAILDDAIRVVNQL 207
                              5669*********************9...9****************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.788156207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-5162213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-5162207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.72E-11164228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-9164229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.46E-6164208No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MMYQSNEDDD DLFASLCFDH HSNEGEDPYA FIQQTDQENL FPEFGLNLQP EQDHHVCTQF  60
DSFSGNLPQV CSFTGDNNGL GPFCGLVYST NSIGSAQLDL GTHSFRGTTT HVQQEQEQER  120
ACCPVVEINS SSSVEVVKEE FDEECSRKRG RTGPCSKPGT KAGREKKKRE MLNDKFMDLS  180
SVLEPTRTPK TDKPAILDDA IRVVNQLRGE AHELKETNQM LLEEIKSLKE EKNELREEKM  240
VLKSDKEKME QQMRSMAAVP SPGFMPSHPA AFHQNKMAVY GSYGYYPNMP VMPYLLPPSQ  300
RDTSQDQQNW SKAA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1146168RKRGRTGPCSKPGTKAGREKKKR
2162170GREKKKREM
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00372DAPTransfer from AT3G23210Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00117.1_g00009.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018433039.10.0PREDICTED: transcription factor bHLH34-like
SwissprotQ9LTC71e-125BH034_ARATH; Transcription factor bHLH34
TrEMBLA0A0D3ABB41e-170A0A0D3ABB4_BRAOL; Uncharacterized protein
TrEMBLA0A3P6FUV41e-170A0A3P6FUV4_BRAOL; Uncharacterized protein (Fragment)
STRINGBo1g102270.11e-171(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40262653
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23210.14e-92bHLH family protein
Publications ? help Back to Top
  1. Li X,Zhang H,Ai Q,Liang G,Yu D
    Two bHLH Transcription Factors, bHLH34 and bHLH104, Regulate Iron Homeostasis in Arabidopsis thaliana.
    Plant Physiol., 2016. 170(4): p. 2478-93
    [PMID:26921305]
  2. Liang G,Zhang H,Li X,Ai Q,Yu D
    bHLH transcription factor bHLH115 regulates iron homeostasis in Arabidopsis thaliana.
    J. Exp. Bot., 2017. 68(7): p. 1743-1755
    [PMID:28369511]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  4. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]