PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00104.1_g00055.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 60aa    MW: 6855.67 Da    PI: 10.9631
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00104.1_g00055.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH171.1e-0517431442
                             HHHHHHHHHHHCTSCC.C...TTS-STCHH CS
                      HLH 14 driNsafeeLrellPk.askapskKlsKae 42
                             d+iN+ + +L++llP+ +   +s++ +Ka+
  Rsa1.0_00104.1_g00055.1 17 DQINDLIIKLQQLLPElR---NSRRSDKAS 43
                             79**************55...888899986 PP

Sequence ? help Back to Top
Protein Sequence    Length: 60 aa     Download sequence    Send to blast
MSGRRSRSRQ SSGISEDQIN DLIIKLQQLL PELRNSRRSD KASFSIESVT RDVQLHKESA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895746e-53AC189574.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH011B08, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013591036.11e-16PREDICTED: transcription factor PRE3-like
RefseqXP_013681754.11e-16PREDICTED: transcription factor PRE3-like
RefseqXP_013726392.18e-17PREDICTED: transcription factor PRE3-like
SwissprotQ9CA649e-13PRE3_ARATH; Transcription factor PRE3
TrEMBLA0A0D3CWN21e-16A0A0D3CWN2_BRAOL; Uncharacterized protein
TrEMBLA0A078D9A31e-16A0A078D9A3_BRANA; BnaA07g22200D protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74500.11e-12activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1