PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00060.1_g00024.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 262aa    MW: 29348.5 Da    PI: 4.8043
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00060.1_g00024.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.34.5e-1979130156
                      AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                              s y+G+r+++ +grW+AeIrdp     +  r++lg+f tae+Aa+a++  +k+++g+
  Rsa1.0_00060.1_g00024.1  79 SEYRGIRRRP-WGRWAAEIRDPI----KgVRVWLGTFNTAEDAARAYDLEAKRIRGA 130
                              569*******.**********72....46*************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.68E-2279138IPR016177DNA-binding domain
CDDcd000184.13E-3179138No hitNo description
PfamPF008473.2E-1280129IPR001471AP2/ERF domain
SMARTSM003801.0E-3680143IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.7E-3180138IPR001471AP2/ERF domain
PROSITE profilePS5103223.97380137IPR001471AP2/ERF domain
PRINTSPR003673.0E-118192IPR001471AP2/ERF domain
PRINTSPR003673.0E-11103119IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MCGGAVISEY ITPSRSGRSS ASKSSSWRRD DVVVDLTLDD FEGEFESENE EFYGFSTAKP  60
ARGFIEEDAR KNKKKKKSSE YRGIRRRPWG RWAAEIRDPI KGVRVWLGTF NTAEDAARAY  120
DLEAKRIRGA KAKLNFPNES PSRKRKASSS SSKQPPQVKV EEKREEVAVA CSSLWEGDTI  180
QVDTQWLEEA IKGGEKRQKG CDGDGEGDDV NAQLSEELLA FEKETECFFQ MPFMEGGNCG  240
SSSSSTPMTS VFEGDDVLDL WY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-2277137263ATERF1
3gcc_A6e-2277137263ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17287KKKKKSSEYRGIRRRP
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00060.1_g00024.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895751e-158AC189575.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH011C10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018445528.11e-134PREDICTED: ethylene-responsive transcription factor ERF073-like
RefseqXP_018445532.11e-134PREDICTED: ethylene-responsive transcription factor ERF073-like
SwissprotQ8H0T57e-64ERF73_ARATH; Ethylene-responsive transcription factor ERF073
TrEMBLA0A0D3CX441e-117A0A0D3CX44_BRAOL; Uncharacterized protein
STRINGBo6g091540.11e-118(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM137371625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72360.21e-56ERF family protein
Publications ? help Back to Top
  1. Yang CY,Huang YC,Ou SL
    ERF73/HRE1 is involved in H2O2 production via hypoxia-inducible Rboh gene expression in hypoxia signaling.
    Protoplasma, 2017. 254(4): p. 1705-1714
    [PMID:27995331]