PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00058.1_g00026.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 551aa    MW: 60455.1 Da    PI: 7.8718
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00058.1_g00026.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH55.51e-17288337255
                              HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              r +h++ E+rRR++iN++f+ Lr+l+P++    ++K +Ka+ L +++eYI+ Lq
  Rsa1.0_00058.1_g00026.1 288 RSKHSATEQRRRSKINDRFQMLRQLIPNS----DQKRDKASFLLEVIEYIQFLQ 337
                              889*************************9....9*******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.104.3E-23285357IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.225286336IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-18287353IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.21E-15288339No hitNo description
PfamPF000103.4E-15288337IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.4E-13292342IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0009742Biological Processbrassinosteroid mediated signaling pathway
GO:1902448Biological Processpositive regulation of shade avoidance
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 551 aa     Download sequence    Send to blast
MELPQPRPFK TQGRKPTHDF LSLCSHPPTL QPDPKPTTAP SPQGSHLKTH DFLQPLECVG  60
AKEETSRIDT TRIASEKPPP PAPPPPLQHV LPGGIGTYTI SPIPYFHNQQ RIPKPELSPP  120
MMFSAAAQQA GGGNERNVVE ENSNSNSSSY AAAAAAASGF TLWDESGSGK KGQTRKENNA  180
GERAGIRADD AATMGQWPVV ERRSQSLTNT PLSGFSSRSS SQGSGLKSQS FMDMLRSAKG  240
TSQDDDFDDE EDFVMKKESS STSQIHRDLR VKAEARGGGN DQKLNTPRSK HSATEQRRRS  300
KINDRFQMLR QLIPNSDQKR DKASFLLEVI EYIQFLQEKT SKYETPYQGW NHDPAKLLNW  360
QRNNQHLVPE GTVAFAPKLE EEKNNIPIPV LATTPQGVVT DRPETLNRAT PTTGTVPLSA  420
QSNSFLSPVI AVNPVTHLHT RVAASETVEP SESSRSHTQP LKEEGDDEEV HAGNISISSV  480
YSQGLVKTLR EALENSGVDL TKASISVEIE LAKQSSSFKD HELRGPVSRT GNDDDAKQSR  540
KPKRLKTNNT S
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00498DAPTransfer from AT5G08130Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013715668.10.0PREDICTED: transcription factor BIM1-like isoform X1
SwissprotQ9LEZ30.0BIM1_ARATH; Transcription factor BIM1
TrEMBLA0A078C1A00.0A0A078C1A0_BRANA; BnaA10g23230D protein
STRINGBra009322.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69672744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08130.40.0bHLH family protein