PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00057.1_g00002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 417aa    MW: 48073.9 Da    PI: 8.9104
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00057.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.51.4e-0990137355
                              HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              r h + Er RR++ ++++  L +llP a     +K +K +i+ekAv+ I++L+
  Rsa1.0_00057.1_g00002.1  90 RQHMMKERTRREKQKQSYLALHSLLPFA-----TKSNKNSIVEKAVDQIRKLE 137
                              6799************************.....9****************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.49E-1185151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.97E-985141No hitNo description
Gene3DG3DSA:4.10.280.108.0E-886153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.29487136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-690137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.7E-693142IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd062224.76E-14275391No hitNo description
PfamPF134561.3E-9275393No hitNo description
SuperFamilySSF530988.35E-8275396IPR012337Ribonuclease H-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0003676Molecular Functionnucleic acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MDFFSLDSVF QEEGEKFWNM IAGEVSGDGD GDRTVSVLNR SAFRSYVRDN EQRMVSSSST  60
VNVKKRMVNL LRKNWEKKKI VAVPENERSR QHMMKERTRR EKQKQSYLAL HSLLPFATKS  120
NKNSIVEKAV DQIRKLEGLK KELERRMNVL EAKSARDHDE MNGTKVRFNI QEPLSGIDSI  180
VEVLQCLKSM GTNLNTVQAN FSPHEFSATM NIETQKARND KLFRRIDRDP LELVRYVESE  240
CQVWFNTNEM IPPVVQESNV EEPQVISLGN ICLLDGSWTS HAQFSGCGWV WLNSGGKTQL  300
MGSQNFSRRK SALHSEVEAL RWVMENMLQH STCQNFGTDC KELIAMIKEP HAWTSFATEL  360
ERIETLLICF LDFKISYVPR ARNQISDFLA KTARSFHRKL HFTGCSIPVW LSRPPQA
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00057.1_g00002.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894021e-143AC189402.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB057L05, complete sequence.
GenBankAC1895911e-143AC189591.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH013D23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018467064.11e-152PREDICTED: transcription factor bHLH92-like
SwissprotQ9FIX54e-94BH092_ARATH; Transcription factor bHLH92
TrEMBLA0A0D3D8P71e-125A0A0D3D8P7_BRAOL; Uncharacterized protein
STRINGBo7g065640.11e-126(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96022537
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43650.12e-96bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]