PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00056.1_g00052.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family TCP
Protein Properties Length: 209aa    MW: 22329 Da    PI: 10.6728
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00056.1_g00052.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP124.11.5e-38111683115
                      TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsss 87 
                              +kk + +++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++  ++s + ++ + s 
  Rsa1.0_00056.1_g00052.1  11 VKKPPAKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFStASASLRGNSTTLS- 95 
                              79*************************************************************9999988742222222222222. PP

                      TCP  88 g.............................................kaaksaakskksqksaasalnlakesr 115
                              +                                             +  ++++  +++q+++a+ l ++++++
  Rsa1.0_00056.1_g00052.1  96 SsldhkpllgsspfilgkrvradedtpsgfwaaparpefgqvwsfaAGGPQEMFLQQQQQQQAAGLFIHQQQQ 168
                              1355666778888888888888888888888888888888888887444444433444444443444444443 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.1E-3416152IPR005333Transcription factor, TCP
PROSITE profilePS5136927.8921670IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MSNNNDGALV VKKPPAKDRH SKVDGRGRRI RMPIICAARV FQLTRELGHK SDGQTIEWLL  60
RQAEPSIIAA TGTGTTPASF STASASLRGN STTLSSSLDH KPLLGSSPFI LGKRVRADED  120
TPSGFWAAPA RPEFGQVWSF AAGGPQEMFL QQQQQQQAAG LFIHQQQQAA MGEASAARVG  180
NYLPGHLNLL ASLSSGAPGS GRREGDDQR
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00056.1_g00052.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018456989.11e-133PREDICTED: transcription factor TCP7-like
SwissprotQ9FMX21e-104TCP7_ARATH; Transcription factor TCP7
TrEMBLA0A0D3E1M31e-129A0A0D3E1M3_BRAOL; Uncharacterized protein
STRINGBo9g014260.11e-130(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17822685
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23280.12e-67TCP family protein