PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00055.1_g00053.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NF-YA
Protein Properties Length: 286aa    MW: 31494.6 Da    PI: 10.2187
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00055.1_g00053.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA92.17.2e-29136195258
                CBFB_NFYA   2 eplYVNaKQyqrIlkRRqkRaklee...ekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                               ++YVN+KQy++I++RRq+Rak+++   ++k ++k rkpy+h+SRh hAlrRpRgsgGrF
  Rsa1.0_00055.1_g00053.1 136 GTIYVNSKQYHGIIRRRQSRAKAAAildQNKPSSKFRKPYMHHSRHLHALRRPRGSGGRF 195
                              689*********************9999*******************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005212.0E-28133198IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115234.67134198IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006164.5E-21137159IPR001289Nuclear transcription factor Y subunit A
PfamPF020452.4E-23137195IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006164.5E-21172195IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MAMQTMREGL PSAPQISWWN AFGSQPLTPE SLSGDSDSFA GAKVRSAGGI EQGVNKQSNS  60
ASHFAFSLGE VKSSRVVPKP QGSAFSMQPP YLELGFSQPQ IYTKYPCVEQ QYYGVLSAYG  120
PHSSVMLPLN METEDGTIYV NSKQYHGIIR RRQSRAKAAA ILDQNKPSSK FRKPYMHHSR  180
HLHALRRPRG SGGRFLNTKS QNNAKKADGT KQTMPQPQPQ RSNSQDSDVL HPESMTMNLS  240
NRLGSEVTSM NYFLGSSLHP LGGMVMPSKW ITATAAMDNG CCNFKT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_A6e-15138196560HAPB protein
4g92_A6e-15138196560HAPB protein
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013735933.10.0PREDICTED: nuclear transcription factor Y subunit A-2-like
SwissprotQ9M9X41e-165NFYA2_ARATH; Nuclear transcription factor Y subunit A-2
TrEMBLA0A0D3B9V30.0A0A0D3B9V3_BRAOL; Uncharacterized protein
TrEMBLW6D5P70.0W6D5P7_BRANA; Transcription factor subunit NF-YA2
STRINGBra001164.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30082767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05690.11e-167nuclear factor Y, subunit A2