PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00051.1_g00025.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 185aa    MW: 20536.2 Da    PI: 8.862
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00051.1_g00025.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.54e-19555155
                      AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                             ++++GVr++  +g+Wv+eIr+p        +r++lg+f taeeAa+a+++a+  ++g
  Rsa1.0_00051.1_g00025.1  5 KKFRGVRQRQ-WGSWVSEIRHP-----LlkRRVWLGTFNTAEEAARAYDQAAVLMNG 55
                             59*****999.**********8.....334*********************977765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.68E-33564No hitNo description
SuperFamilySSF541711.96E-20664IPR016177DNA-binding domain
SMARTSM003805.0E-39669IPR001471AP2/ERF domain
PfamPF008477.3E-12651IPR001471AP2/ERF domain
PROSITE profilePS5103221.746663IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-32663IPR001471AP2/ERF domain
PRINTSPR003671.4E-10718IPR001471AP2/ERF domain
PRINTSPR003671.4E-102945IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MVSSKKFRGV RQRQWGSWVS EIRHPLLKRR VWLGTFNTAE EAARAYDQAA VLMNGQNAKT  60
NFPVIKSNGS VSPDVNSPLS ELLNAKLRKN CKDQTPYLTC LRLDNDSSHI GVWQKRAGSS  120
SSQNWVKLVE LGDSVNASAG DAGSDKMKKG NDDVEEEDQM AMQMIEELLN WTCPASASIS  180
GKIFM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-176701479Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPromotes cuticle formation by inducing the expression of enzymes involved in wax biosynthesis. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:15319479}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00527DAPTransfer from AT5G25390Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00051.1_g00025.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By wounding in cauline leaves, stems, and siliques, but not in rosette leaves. {ECO:0000269|PubMed:15319479}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893210.0AC189321.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB036J07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018455155.11e-135PREDICTED: ethylene-responsive transcription factor SHINE 3-like
SwissprotQ3E9581e-107SHN3_ARATH; Ethylene-responsive transcription factor SHINE 3
TrEMBLA0A3P6E6U01e-125A0A3P6E6U0_BRAOL; Uncharacterized protein
STRINGBo9g011380.11e-126(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM83428116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25390.21e-100ERF family protein
Publications ? help Back to Top
  1. Djemal R,Khoudi H
    Isolation and molecular characterization of a novel WIN1/SHN1 ethylene-responsive transcription factor TdSHN1 from durum wheat (Triticum turgidum. L. subsp. durum).
    Protoplasma, 2015. 252(6): p. 1461-73
    [PMID:25687296]
  2. Sadler C, et al.
    Wax and cutin mutants of Arabidopsis: Quantitative characterization of the cuticular transport barrier in relation to chemical composition.
    Biochim. Biophys. Acta, 2016. 1861(9 Pt B): p. 1336-1344
    [PMID:26965486]