PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00043.1_g00007.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 614aa    MW: 66447.1 Da    PI: 5.2383
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00043.1_g00007.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH391.5e-12441486454
                              HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                      HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                              +h e+Er+RR+++N++f  Lr ++P+       K++Ka+ L  A+ YI++L
  Rsa1.0_00043.1_g00007.1 441 NHVEAERQRREKLNQRFYALRAVVPNV-----SKMDKASLLGDAIAYINEL 486
                              799***********************6.....5***************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.5E-5757242IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.111437486IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.43E-14440490No hitNo description
SuperFamilySSF474598.37E-18440509IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-18441507IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.0E-10441486IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.5E-16443492IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009269Biological Processresponse to desiccation
GO:0009611Biological Processresponse to wounding
GO:0009737Biological Processresponse to abscisic acid
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0009963Biological Processpositive regulation of flavonoid biosynthetic process
GO:0010200Biological Processresponse to chitin
GO:0043619Biological Processregulation of transcription from RNA polymerase II promoter in response to oxidative stress
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051090Biological Processregulation of sequence-specific DNA binding transcription factor activity
GO:2000068Biological Processregulation of defense response to insect
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 614 aa     Download sequence    Send to blast
MTEPTMNLWT TDDNASMMEA FMSSSSDISA LWPPATTTTA TASTTAPAPA GFNEESLQQR  60
LQALIEGTNE GWTYAIFWQP SYDFSGASVL GWGDGYYKGE EDKGKPRQRS TPPPFSTPAD  120
QKYRKKVLRE LNSLISGGGG PTTDDAVDEE VTDTEWFFLV SMTQSFACGS GLAGKAFATG  180
NAVWVSGPDQ LTGSGCERAK QGGVFGMQTI ACVPSANGVV ELGSTEQIRQ SSDLMNKVRV  240
LFNFNGGGAG DLSGLNWNLD PDQGENDPSM WINDPIGVPE QGNGAPSSSS QLFAKSIQFE  300
HGGSSSTITE NPNPDPTPSP VHSQIQNPKL SNNNFSRELN FSTSSTTLVK PRAGEILSFG  360
DEGKRSSVNP DPSSYSGQTQ FENKRKKSIG QSDHDKVLTF GTGGGESDHS DLEASVVKEI  420
PEKRPKKRGR KPANGREEPL NHVEAERQRR EKLNQRFYAL RAVVPNVSKM DKASLLGDAI  480
AYINELKAKV TKTESEKSQV KTQLEEVKME LAGRKASAGG GDLSSSCSMT AIKPVGMEIE  540
VKIIGWDAMI RVESSKRNHP AARLMSALMD LELEVNHASM SVVNDLMIQQ ATVKMGFRIY  600
TQEQLRASLI SKIG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A8e-72522454195Transcription factor MYC3
4rqw_B8e-72522454195Transcription factor MYC3
4rs9_A8e-72522454195Transcription factor MYC3
4yz6_A8e-72522454195Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1422430KRPKKRGRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00084PBMTransfer from AT1G32640Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF4238030.0EF423803.1 Brassica oleracea var. gemmifera MYC mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013735805.10.0PREDICTED: transcription factor MYC2
SwissprotQ392040.0MYC2_ARATH; Transcription factor MYC2
TrEMBLM4D1290.0M4D129_BRARP; Uncharacterized protein
STRINGBra010178.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12652896
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32640.10.0bHLH family protein