PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00036.1_g00008.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 224aa    MW: 24752.3 Da    PI: 4.6302
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00036.1_g00008.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.71.4e-183282155
                      AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                             + y+GVr +  +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++aa++ ++g
  Rsa1.0_00036.1_g00008.1 32 PVYRGVRMRA-WGKWVSEIREPRK---KSRIWLGTFSTAEMAARAHDAAALTIKG 82
                             68*****998.**********843...6**********************99876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008477.0E-133282IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.9E-323391IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-213391IPR016177DNA-binding domain
SMARTSM003801.8E-363396IPR001471AP2/ERF domain
PROSITE profilePS5103223.133390IPR001471AP2/ERF domain
CDDcd000182.84E-233492No hitNo description
PRINTSPR003678.6E-113445IPR001471AP2/ERF domain
PRINTSPR003678.6E-115672IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MSITDSAKQS SPVEEEHPRT NNNNKKRARP DPVYRGVRMR AWGKWVSEIR EPRKKSRIWL  60
GTFSTAEMAA RAHDAAALTI KGTSAVLNFP ELATYLPRPA SSSPRDVQAA AAVAAAMDFS  120
DPTTVVVVPE THLSPSSSYS TSTSSEEAAS STAEELSEIV ELPSLETSYD EPWSEFVYVD  180
SAYPPSSPWY FNNCYSFYYH SDENGTSMSE PFESSNFGPL FPLI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-1834901572Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00036.1_g00008.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0042601e-109AC004260.1 Arabidopsis thaliana chromosome I BAC T14N5 genomic sequence, complete sequence.
GenBankAY5608751e-109AY560875.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At1g77200) mRNA, complete cds.
GenBankCP0026841e-109CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankDQ4464371e-109DQ446437.1 Arabidopsis thaliana clone pENTR221-At1g77200 AP2 domain-containing transcription factor TINY (At1g77200) mRNA, complete cds.
GenBankDQ6529381e-109DQ652938.1 Arabidopsis thaliana clone 0000016559_0000011559 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018459987.11e-162PREDICTED: ethylene-responsive transcription factor ERF037-like
SwissprotO806541e-101ERF37_ARATH; Ethylene-responsive transcription factor ERF037
TrEMBLD7KUG71e-103D7KUG7_ARALL; Uncharacterized protein
STRINGXP_010471905.11e-106(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18528283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77200.14e-90ERF family protein