PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00030.1_g00026.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 229aa    MW: 24963.8 Da    PI: 12.1824
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00030.1_g00026.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH120.000381722051755
                              HHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH  17 NsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              N +   L +l+P +     +K s   iLe+A++YI+ L+
  Rsa1.0_00030.1_g00026.1 172 NRKVRVLGRLVPGC-----RKESVPVILEEATDYIQALE 205
                              55566677777777.....899999***********985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.842155204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.49E-8155224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.9E-7171216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MASLISDTEP PSHPRPSSTD LLRRKKRLSV SSSASVTTGD DGDSHHARWK SEKQQRNYSA  60
KLIQALQQVR LSSSSSSAAT PSPKRGKAVR EAADRALAVS ARGRTLWSRA ILANRIKLKF  120
RKQKRPRPAA AIPAVITTTG SISSSGGGGR RSWKKRRVTV VKLNKKSIPT VNRKVRVLGR  180
LVPGCRKESV PVILEEATDY IQALEMQVRA MKSLAELLSG SNSAPTRPI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12127LRRKKRL
2123127KRPRP
Functional Description ? help Back to Top
Source Description
UniProtbHLH transcription factor that binds DNA on specific sequence 5'-CANNTG-3' in target gene promoters (PubMed:24009530). Negatively regulates brassinosteroid signaling (PubMed:20023194). Together with BHLH148/RITF1, regulates the transcription of several genes involved in the detoxification of reactive oxygen species (ROS) generated by salt (NaCl) stress. Confers tolerance to salt and to the oxidative stress-inducing reagents hydrogen peroxide H(2)O(2) and methyl viologen (MV) (PubMed:24009530). {ECO:0000269|PubMed:20023194, ECO:0000269|PubMed:24009530}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00030.1_g00026.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salt (NaCl) stress. {ECO:0000269|PubMed:24009530}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018434597.11e-132PREDICTED: transcription factor bHLH148-like
RefseqXP_018434620.11e-132PREDICTED: transcription factor bHLH148-like
SwissprotQ9C8Z94e-80BH148_ARATH; Transcription factor bHLH148
TrEMBLA0A0D3AFA51e-100A0A0D3AFA5_BRAOL; Uncharacterized protein
TrEMBLA0A3P6G9X91e-100A0A3P6G9X9_BRAOL; Uncharacterized protein
STRINGBo1g147860.11e-101(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61571318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06590.23e-67bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sukweenadhi J, et al.
    Paenibacillus yonginensis DCY84(T) induces changes in Arabidopsis thaliana gene expression against aluminum, drought, and salt stress.
    Microbiol. Res., 2015. 172: p. 7-15
    [PMID:25721473]