PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00030.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 206aa    MW: 23339 Da    PI: 9.3494
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00030.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.61.6e-11250455
                             HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                             +h ++Er+RR+++N+ +  Lr+l P     + k+ + a+i   ++e+Ik++q
  Rsa1.0_00030.1_g00001.1  2 SHIAVERNRRRQMNEHLKSLRSLTPCF---YIKRGDQASIIGGVIEFIKEMQ 50
                             89************************9...9*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.33E-10154No hitNo description
SuperFamilySSF474594.43E-15170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.31149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-8250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-11261IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.5E-10455IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MSHIAVERNR RRQMNEHLKS LRSLTPCFYI KRGDQASIIG GVIEFIKEMQ QLVQVLESKK  60
RRKTLNQPSF LHDHQTLEPS ILAANTTTNA TTRVPFSRIE NVMSTSTFKE VGACCNSPHA  120
DVEAKISGSN VVLRVVSRRI EGQLVRIISA LEKLSFQVLH LNISSMEETV LYFFVVKIGL  180
ECRISLEELT VEVQRSFVPE VIVSTN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15862KKRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ8636451e-93DQ863645.1 Arabidopsis thaliana helix-loop-helix protein (MUTE) mRNA, complete cds.
GenBankDQ6530681e-93DQ653068.1 Arabidopsis thaliana clone 0000012753_0000009233 unknown mRNA.
GenBankDQ4466391e-93DQ446639.1 Arabidopsis thaliana clone pENTR221-At3g06120 basic helix-loop-helix family protein (At3g06120) mRNA, complete cds.
GenBankAF4885801e-93AF488580.1 Arabidopsis thaliana clone bHLH045 putative bHLH transcription factor mRNA, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009124939.11e-135PREDICTED: transcription factor MUTE-like
SwissprotQ9M8K61e-130MUTE_ARATH; Transcription factor MUTE
TrEMBLA0A078G2F41e-135A0A078G2F4_BRANA; BnaAnng03080D protein
TrEMBLM4FGK61e-135M4FGK6_BRARP; Uncharacterized protein
STRINGBra040234.1-P1e-135(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM70732640
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06120.11e-127bHLH family protein