PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00024.1_g00014.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 244aa    MW: 27780.1 Da    PI: 4.3534
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00024.1_g00014.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.17.5e-145699755
                             HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH  7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                               Er+RR+++N++++ Lr+++P+      +K++Ka+i + A+ YI+ Lq
  Rsa1.0_00024.1_g00014.1 56 VSERNRRQKLNQRLFALRSVVPNI-----TKMDKASIIKDAISYIQGLQ 99
                             57*********************7.....7******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.1774998IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.93E-1752115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.29E-135299No hitNo description
Gene3DG3DSA:4.10.280.103.3E-1755114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.6E-1455104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-115699IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MENIDQEFNN YWEHNSFLQN EDFEYDSWPL EEAISGSYDS SSPDGAASSP ASKNIVSERN  60
RRQKLNQRLF ALRSVVPNIT KMDKASIIKD AISYIQGLQY EEAKLEAEIR ELESTPKSSL  120
SFSKDFDRDL LVPVTSKKMK QLDSGSSRSL IEVIEVTSMG DRVMVVNVTC NKRTDTMVKL  180
CEVFESLNLK ILTSNLNSFS GMIFYTLFIE ADEEEQEVVR LKIETGIGAY NETQSPTWSI  240
DSLY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0866660.0AY086666.1 Arabidopsis thaliana clone 266884 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009126855.11e-172PREDICTED: transcription factor bHLH35-like
RefseqXP_013684566.11e-172PREDICTED: transcription factor bHLH35-like
SwissprotQ2HIV91e-161BH035_ARATH; Transcription factor bHLH35
TrEMBLA0A078IEW91e-173A0A078IEW9_BRANA; BnaA02g08320D protein
STRINGBra020462.1-P1e-172(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63672745
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.11e-148bHLH family protein