PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00020.1_g00036.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 202aa    MW: 23097.9 Da    PI: 5.1658
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00020.1_g00036.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.25.5e-152979155
                      AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                             + ++G+r++    +Wv+e+r+p     +  +r++lg++ ta++Aa+a++ a+++l+g
  Rsa1.0_00020.1_g00036.1 29 PVFRGIRRRN-GDKWVCEVREP-----ThqQRIWLGTYPTADMAARAHDVAALALRG 79
                             579****877.9*********8.....336*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.9E-102979IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-283089IPR001471AP2/ERF domain
SuperFamilySSF541714.05E-193089IPR016177DNA-binding domain
SMARTSM003802.2E-233093IPR001471AP2/ERF domain
PROSITE profilePS5103221.2853087IPR001471AP2/ERF domain
CDDcd000186.55E-263189No hitNo description
PRINTSPR003679.6E-73142IPR001471AP2/ERF domain
PRINTSPR003679.6E-75369IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MDNNDGIILA EMRPKRRAGR KVFNETRHPV FRGIRRRNGD KWVCEVREPT HQQRIWLGTY  60
PTADMAARAH DVAALALRGR SACLNFADSA WRLPVPESNH PDVIRRAAAE AAEMFRPTEY  120
GSGITVLPSY GNEVYMGSGS GSEEPNMYGY VEEEEEVSTT MMRLATEPLM SPPRSYMENV  180
TPNGYMEEEM SYEDMSLWSY RY
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates cold or dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00020.1_g00036.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ0135960.0KJ013596.1 Brassica rapa subsp. chinensis CBF6C mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018447913.11e-149PREDICTED: dehydration-responsive element-binding protein 1F-like
SwissprotQ9LN861e-109DRE1F_ARATH; Dehydration-responsive element-binding protein 1F
TrEMBLA0A078JXH91e-133A0A078JXH9_BRANA; BnaAnng36290D protein
TrEMBLA0A397YF301e-133A0A397YF30_BRACM; Uncharacterized protein
TrEMBLM4DJT51e-133M4DJT5_BRARP; Uncharacterized protein
TrEMBLW8QKY31e-133W8QKY3_BRARC; CBF6C
STRINGBra016763.1-P1e-134(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35528187
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12610.15e-80ERF family protein
Publications ? help Back to Top
  1. Kazama D,Kurusu T,Mitsuda N,Ohme-Takagi M,Tada Y
    Involvement of elevated proline accumulation in enhanced osmotic stress tolerance in Arabidopsis conferred by chimeric repressor gene silencing technology.
    Plant Signal Behav, 2014. 9(3): p. e28211
    [PMID:24614501]
  2. Kazama D, et al.
    Identification of Chimeric Repressors that Confer Salt and Osmotic Stress Tolerance in Arabidopsis.
    Plants (Basel), 2013. 2(4): p. 769-85
    [PMID:27137403]
  3. Song GQ,Gao X
    Transcriptomic changes reveal gene networks responding to the overexpression of a blueberry DWARF AND DELAYED FLOWERING 1 gene in transgenic blueberry plants.
    BMC Plant Biol., 2017. 17(1): p. 106
    [PMID:28629320]
  4. Imran QM, et al.
    Transcriptome profile of NO-induced Arabidopsis transcription factor genes suggests their putative regulatory role in multiple biological processes.
    Sci Rep, 2018. 8(1): p. 771
    [PMID:29335449]