PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00020.1_g00033.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 191aa    MW: 20865.4 Da    PI: 4.9069
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00020.1_g00033.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.75.1e-171362155
                      AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                             + y+G+r ++ +g+Wv+eIr+p++   ++r++lg++ tae+Aa+a++ a+ +l+g
  Rsa1.0_00020.1_g00033.1 13 PVYRGIR-CR-SGKWVCEIREPKK---TTRIWLGTYPTAEMAAAAYDVAAIALKG 62
                             68****9.55.6*********854...5***********************9988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.5E-101362IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-191471IPR016177DNA-binding domain
PROSITE profilePS5103220.3631470IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-271470IPR001471AP2/ERF domain
SMARTSM003804.3E-281476IPR001471AP2/ERF domain
CDDcd000181.10E-161570No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MATTGLASRK KDPVYRGIRC RSGKWVCEIR EPKKTTRIWL GTYPTAEMAA AAYDVAAIAL  60
KGRDAVLNFP GSVGSYPVPL STSAADIRTA AAAAASMKGC KREEEEDKAQ MNSSSFSTSR  120
TSDHFHVHDH DMMASSSWCG TEFMDEEEFL NMPNLLADMA EGMMVAPPSW IGARPANDSP  180
ENSNDEDLWG Y
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1215701572Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00138DAPTransfer from AT1G12630Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00020.1_g00033.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018449465.11e-141PREDICTED: ethylene-responsive transcription factor ERF027
SwissprotQ38Q392e-77ERF27_ARATH; Ethylene-responsive transcription factor ERF027
TrEMBLD7KP862e-85D7KP86_ARALL; DNA binding protein
STRINGfgenesh1_pm.C_scaffold_10010633e-86(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19572777
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12630.12e-73ERF family protein