PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00020.1_g00015.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 446aa    MW: 49534.4 Da    PI: 6.5136
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00020.1_g00015.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.58.5e-12264306754
                              HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                      HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                              ++ErrRR+++N+++  Lr+++Pk +      K++ a+iL  A++Y+k+L
  Rsa1.0_00020.1_g00015.1 264 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIDYLKEL 306
                              79*********************66......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.866257306IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.95E-17260326IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.2E-14263312IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-9263306IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.45E-13264310No hitNo description
Gene3DG3DSA:4.10.280.101.2E-15264319IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048732.63E-6375435No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010444Biological Processguard mother cell differentiation
GO:0050826Biological Processresponse to freezing
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MNGDGTWLGE ASQAGDNEDE SGTWVRNTEE NWFNNPQPLH HNDLRFSGGL PLNPSENLLL  60
LLQQQSIDTS SPLQHFTLDS APQQQQQEQS FLATKACFTS LLNVPTSNNN NINNNPFDEL  120
GFSSGFLGQT HVNQTPNFSQ LCSPPHFLSS RPENTTGVGN RFTPLEFAGI TNGVFENRAK  180
VLKPLDVLAS PTSQPTLFQK RAAMRQSSSS KTCNSESSSE MRRSSYEREN LDDASTGITD  240
IISDEHNNNN NKGKKKGMPA KNLMAERRRR KKLNDRLYML RSVVPKISKM DRASILGDAI  300
DYLKELLQRI NDLHTELEST APPSSSSLHP LTPTTQTLSY RVKEELCPSS SSFPSPRDQQ  360
ARIEVKLREG KAVNIHMFCG RRPGLLLSTM RALDNLGLDV QQAVVSCFNG FALDVFRAEQ  420
CQEGHDVVPE QIKAVLLDTV GYTGLV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1253271KKKGMPAKNLMAERRRRKK
2265272ERRRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU3696700.0EU369670.1 Arabidopsis thaliana bHLH protein (SCREAM2) mRNA, complete cds.
GenBankBT0053770.0BT005377.1 Arabidopsis thaliana At1g12860 mRNA, complete cds.
GenBankAK1180110.0AK118011.1 Arabidopsis thaliana At1g12860 mRNA for putative bHLH transcription factor (bHLH033), complete cds, clone: RAFL19-21-N13.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013657326.10.0PREDICTED: transcription factor SCREAM2-like
RefseqXP_013657325.10.0PREDICTED: transcription factor SCREAM2-like
RefseqXP_013657324.10.0PREDICTED: transcription factor SCREAM2-like
RefseqXP_013657322.10.0PREDICTED: transcription factor SCREAM2-like
RefseqXP_013604462.10.0PREDICTED: transcription factor SCREAM2-like
RefseqXP_013604461.10.0PREDICTED: transcription factor SCREAM2-like
SwissprotQ9LPW30.0SCRM2_ARATH; Transcription factor SCREAM2
TrEMBLA0A078HA670.0A0A078HA67_BRANA; BnaC03g57010D protein
TrEMBLA0A0D3DPE40.0A0A0D3DPE4_BRAOL; Uncharacterized protein
STRINGBra016749.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19522782
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12860.11e-153bHLH family protein