PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00018.1_g00063.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 231aa    MW: 26339.1 Da    PI: 4.6239
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00018.1_g00063.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.97.8e-162979155
                      AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                             + y+G+r++   ++Wv+e+r+p        +r++lg++ ta++Aa+a++ a+++l+g
  Rsa1.0_00018.1_g00063.1 29 PVYRGIRRRN-GHKWVCEVREP-----IhqRRIWLGTYPTADMAARAHDVAALALRG 79
                             68*****887.9******9997.....337*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.5E-112979IPR001471AP2/ERF domain
SMARTSM003807.3E-253093IPR001471AP2/ERF domain
PROSITE profilePS5103221.7463087IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.1E-283089IPR001471AP2/ERF domain
SuperFamilySSF541712.81E-193089IPR016177DNA-binding domain
PRINTSPR003675.7E-73142IPR001471AP2/ERF domain
CDDcd000182.67E-263189No hitNo description
PRINTSPR003675.7E-75369IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0010371Biological Processregulation of gibberellin biosynthetic process
GO:0016049Biological Processcell growth
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0050826Biological Processresponse to freezing
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MDNNDEIMLA EMTPKRRAGR RVFKETRHPV YRGIRRRNGH KWVCEVREPI HQRRIWLGTY  60
PTADMAARAH DVAALALRGR SACLNFADSA WRLPAPESTD PDVIRRVAAE AAEMFRPTEY  120
DSGITVLPSY GDEVDMGFGS GSGSEERNLY GYVEQGEEEV STTMMXGSGS EERNLYGYVE  180
QGEEEVSTTM MRLATEPLMS PPRSYMEGMT SSSYMEEEMS YQDMSLWSYN Y
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates cold or dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00137DAPTransfer from AT1G12610Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00018.1_g00063.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ0135950.0KJ013595.1 Brassica rapa subsp. chinensis CBF6B mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018469543.11e-144PREDICTED: dehydration-responsive element-binding protein 1F-like
SwissprotQ9LN861e-108DRE1F_ARATH; Dehydration-responsive element-binding protein 1F
TrEMBLA0A3P5YVL91e-135A0A3P5YVL9_BRACM; Uncharacterized protein
TrEMBLW8R4421e-135W8R442_BRARC; CBF6B
STRINGBra019777.1-P1e-134(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35528187
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12610.11e-84ERF family protein
Publications ? help Back to Top
  1. Kazama D,Kurusu T,Mitsuda N,Ohme-Takagi M,Tada Y
    Involvement of elevated proline accumulation in enhanced osmotic stress tolerance in Arabidopsis conferred by chimeric repressor gene silencing technology.
    Plant Signal Behav, 2014. 9(3): p. e28211
    [PMID:24614501]
  2. Kazama D, et al.
    Identification of Chimeric Repressors that Confer Salt and Osmotic Stress Tolerance in Arabidopsis.
    Plants (Basel), 2013. 2(4): p. 769-85
    [PMID:27137403]
  3. Song GQ,Gao X
    Transcriptomic changes reveal gene networks responding to the overexpression of a blueberry DWARF AND DELAYED FLOWERING 1 gene in transgenic blueberry plants.
    BMC Plant Biol., 2017. 17(1): p. 106
    [PMID:28629320]
  4. Imran QM, et al.
    Transcriptome profile of NO-induced Arabidopsis transcription factor genes suggests their putative regulatory role in multiple biological processes.
    Sci Rep, 2018. 8(1): p. 771
    [PMID:29335449]