PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00015.1_g00081.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family M-type_MADS
Protein Properties Length: 153aa    MW: 17573.2 Da    PI: 9.6204
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00015.1_g00081.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF30.16.1e-10932124
                             S---SHHHHHHHHHHHHHHHHHHH CS
                   SRF-TF  1 krienksnrqvtfskRrngilKKA 24
                             kr +++ nrqvt+skR+ gilKKA
  Rsa1.0_00015.1_g00081.1  9 KRLDSSGNRQVTYSKRKCGILKKA 32
                             688999*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006614.9132IPR002100Transcription factor, MADS-box
SMARTSM004328.5E-11146IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.83E-13281IPR002100Transcription factor, MADS-box
PRINTSPR004049.3E-7323IPR002100Transcription factor, MADS-box
PfamPF003191.7E-51332IPR002100Transcription factor, MADS-box
PRINTSPR004049.3E-72338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    Send to blast
MGRVKLKIKR LDSSGNRQVT YSKRKCGILK KAIFSPTGKP TMLHGEQSCI EEVISKFAQL  60
TPQERTKRKL ESLEALKKTF KKLDHDVNIH DFFRSKELPV YPNCFFESVK QEDQKYSNPA  120
QHFEQLGQEG DGCLGLQRIG EEYSYPTPFG TTL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms a heterodimer with the MADS-box protein AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00015.1_g00081.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0941167e-64AB094116.1 Arabidopsis thaliana At1g18750 mRNA for MADS-box protein, partial cds.
GenBankAY1431727e-64AY143172.1 Arabidopsis thaliana MADS-box protein AGL65 (AGL65) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013682304.13e-48agamous-like MADS-box protein AGL65
RefseqXP_013682306.13e-48agamous-like MADS-box protein AGL65
SwissprotQ7X9I03e-46AGL65_ARATH; Agamous-like MADS-box protein AGL65
TrEMBLA0A3P6FBP93e-47A0A3P6FBP9_BRAOL; Uncharacterized protein
STRINGBra031049.1-P9e-48(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59332543
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18750.11e-48AGAMOUS-like 65
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]