PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00015.1_g00049.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 161aa    MW: 18305.2 Da    PI: 4.4705
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00015.1_g00049.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.81.6e-191161155
                      AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                             s+ykGVr ++ +g+Wv+eIr p++   r r++lg+++t+e+Aa+a +aa  +l+g
  Rsa1.0_00015.1_g00049.1 11 SKYKGVRKRR-WGKWVSEIRLPNS---RERIWLGSYDTPEKAARAFDAALFCLRG 61
                             89*****887.**********933...5*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.87E-281170No hitNo description
PfamPF008475.0E-121161IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-211170IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.5E-291270IPR001471AP2/ERF domain
SMARTSM003801.6E-311275IPR001471AP2/ERF domain
PROSITE profilePS5103221.9041269IPR001471AP2/ERF domain
PRINTSPR003679.9E-101324IPR001471AP2/ERF domain
PRINTSPR003679.9E-103551IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MEEGPSSSMK SKYKGVRKRR WGKWVSEIRL PNSRERIWLG SYDTPEKAAR AFDAALFCLR  60
GSGANFNFPE KPPVISGWQN MSRSEIREAA ARFANSEESV GREEKDEEQE SELVVESVFP  120
TVGSGNFASD FGLFDDDLRE ELAPPTLDEN YDCSSVYLWN F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-1611771380Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00015.1_g00049.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1896052e-45AC189605.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH015N11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018435384.11e-114PREDICTED: ethylene-responsive transcription factor ERF017-like
SwissprotQ84QC25e-69ERF17_ARATH; Ethylene-responsive transcription factor ERF017
TrEMBLA0A397YB541e-71A0A397YB54_BRACM; Uncharacterized protein
TrEMBLA0A3P5YJ736e-71A0A3P5YJ73_BRACM; Auxin-responsive protein
TrEMBLM4EQJ86e-71M4EQJ8_BRARP; Auxin-responsive protein
STRINGBra031069.1-P1e-71(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16142890
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.13e-67ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Li SJ, et al.
    The Citrus transcription factor, CitERF13, regulates citric acid accumulation via a protein-protein interaction with the vacuolar proton pump, CitVHA-c4.
    Sci Rep, 2016. 6: p. 20151
    [PMID:26837571]
  3. Yin XR, et al.
    Involvement of an ethylene response factor in chlorophyll degradation during citrus fruit degreening.
    Plant J., 2016. 86(5): p. 403-12
    [PMID:27037684]