PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00002.1_g00077.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family TCP
Protein Properties Length: 394aa    MW: 41741.5 Da    PI: 6.7008
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00002.1_g00077.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP118.11.1e-36442132135
                      TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssas... 83 
                              a+ k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai ++tgt++++a+++  ++s +ss+s   
  Rsa1.0_00002.1_g00077.1  44 AVTKRSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAIVAATGTGTIPANFSsLSVSLRSSGStls 129
                              689******************************************************************99977777777777444 PP

                      TCP  84 nsssg...................................kaaksaakskksqksaasalnlakesrakarararertrekmrikn 134
                              +                                       ++   ++++++ q+ + ++  +++ s+++ r+    +++e++  k+
  Rsa1.0_00002.1_g00077.1 130 A---LppsksvplygalglthhhhqyeeqgggafgahlgfHHHHLQPQQQHHQQAQGETIPPHRFSSKRYRSSVDSSSKEDNEGKQ 212
                              0...2555566677777777777788899999999998764444444444444444445666666666666665555555554444 PP

                      TCP 135 k 135
                              +
  Rsa1.0_00002.1_g00077.1 213 S 213
                              4 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036344.4E-4149209IPR005333Transcription factor, TCP
PROSITE profilePS5136928.41150104IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001047Molecular Functioncore promoter binding
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MDLSDDGATA SRHLLDPSLS IVPRSEDPTT SSTAAATPTT SGGAVTKRST KDRHTKVDGR  60
GRRIRMPALC AARVFQLTRE LGHKSDGETI EWLLQQAEPA IVAATGTGTI PANFSSLSVS  120
LRSSGSTLSA LPPSKSVPLY GALGLTHHHH QYEEQGGGAF GAHLGFHHHH LQPQQQHHQQ  180
AQGETIPPHR FSSKRYRSSV DSSSKEDNEG KQSENKSLKE SEPPAGATGA PMWAVAPTNR  240
SAGGNTFWML PVPTTAAGNQ PAAMESSSNS NSNRAHMWPF GAAGAGAGGG ATHFMAGTGF  300
SFPMDQYRGS PLQLGSFLAQ PQQQQQQPNQ SIGLSMPDSN LGVLAALNAA YSRGGNADAE  360
QVNNAVEHQE KQQQQTQQSD QDDDSRDENS NSDG
Functional Description ? help Back to Top
Source Description
UniProtCan specifically bind site II elements in the promoter region of PP438/PNM1. {ECO:0000269|PubMed:21297037}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00002.1_g00077.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018456993.10.0PREDICTED: transcription factor TCP8
SwissprotQ9C5181e-159TCP8_ARATH; Transcription factor TCP8
TrEMBLA0A291I3120.0A0A291I312_BRARR; TCP8
TrEMBLM4EGH20.0M4EGH2_BRARP; Uncharacterized protein
STRINGBra027886.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM102182433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58100.11e-107TCP family protein
Publications ? help Back to Top
  1. Mazur MJ, et al.
    Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci.
    Front Plant Sci, 2017. 8: p. 2043
    [PMID:29250092]