PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC9907_p1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family LBD
Protein Properties Length: 101aa    MW: 11153.5 Da    PI: 4.9612
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC9907_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26051.62.7e-1625052100
      DUF260  52 eeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100
                 ++r+da++slvyeA+a+++dPvyG+vg+i++l++qle+l+++la +++e
  RrC9907_p1   2 NHRSDALNSLVYEANAKVQDPVYGCVGTISSLNRQLETLQTQLAFAQAE 50 
                 579*****************************************99987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089110.411151IPR004883Lateral organ boundaries, LOB
PfamPF031951.7E-13248IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 101 aa     Download sequence    Send to blast
MNHRSDALNS LVYEANAKVQ DPVYGCVGTI SSLNRQLETL QTQLAFAQAE LVHMKMLQHV  60
DTKSPPYIAS GITFPANKDF SSDVDMAFVY DNGAGESLWS R
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cytokinin. {ECO:0000269|PubMed:17485849}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009149087.11e-58PREDICTED: LOB domain-containing protein 3
RefseqXP_013641646.11e-58LOB domain-containing protein 3
RefseqXP_013659026.11e-58LOB domain-containing protein 3
RefseqXP_013710686.11e-58LOB domain-containing protein 3-like
SwissprotQ9SA515e-51LBD3_ARATH; LOB domain-containing protein 3
TrEMBLA0A078HS023e-57A0A078HS02_BRANA; BnaC05g12610D protein
TrEMBLA0A078JJD73e-57A0A078JJD7_BRANA; BnaA06g38340D protein
TrEMBLA0A291LQZ13e-57A0A291LQZ1_BRARR; Transcription factor LBD3
TrEMBLA0A397Z3B73e-57A0A397Z3B7_BRACM; Uncharacterized protein
TrEMBLA0A3N6QCN13e-57A0A3N6QCN1_BRACR; Uncharacterized protein
TrEMBLA0A3P6FEE13e-57A0A3P6FEE1_BRAOL; Uncharacterized protein
TrEMBLA0A3P6FL123e-57A0A3P6FL12_BRAOL; Uncharacterized protein
TrEMBLM4EB833e-57M4EB83_BRARP; Uncharacterized protein
STRINGBra026042.1-P5e-58(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13128340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16530.12e-53ASYMMETRIC LEAVES 2-like 9
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]