PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC9497_p1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family M-type_MADS
Protein Properties Length: 107aa    MW: 12217.5 Da    PI: 11.2858
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC9497_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF35.71.1e-111040233
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT- CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCda 33
                +i n+s r++t+ kRr g+lKKA+E+ +LC++
  RrC9497_p1 10 FIVNNSSRKTTYKKRR-GLLKKAHEIFTLCGI 40
                799*********9997.*************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.3E-8159IPR002100Transcription factor, MADS-box
PROSITE profilePS5006612.432139IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.67E-12140IPR002100Transcription factor, MADS-box
PfamPF003191.6E-81040IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 107 aa     Download sequence    Send to blast
MTRRKVKLAF IVNNSSRKTT YKKRRGLLKK AHEIFTLCGI MPELSFTVPT ILPLGCGPPL  60
MRITKANKFR LKKKKDNREY LNSLNRRIQI LEGGSDVEIG ESLKTGN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RRKVKLAFIVNNSSRKTTYKKRR
26975RLKKKKD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB6084921e-67AB608492.1 Raphanus sativus DNA, microsatellite locus RsSH024, cultivar: rat-tail radish.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018458729.16e-23PREDICTED: agamous-like MADS-box protein AGL80
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7028415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05860.22e-09M-type_MADS family protein