PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC9192_p1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GATA
Protein Properties Length: 276aa    MW: 29841.5 Da    PI: 8.033
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC9192_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA63.42.7e-20139173135
        GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                 C+nC tt+TplWR+gp+g+k+LCnaCG++++k+++
  RrC9192_p1 139 CANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEER 173
                 ********************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.2E-18133185IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.62E-13136175No hitNo description
PROSITE profilePS5011413.784137169IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.5E-16137173IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.02E-12138170No hitNo description
PfamPF003206.6E-18139173IPR000679Zinc finger, GATA-type
PROSITE patternPS003440139164IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0009909Biological Processregulation of flower development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MMQTPYNTST QGQSCHSCSM FHHHSQSCCY NNNNSNSNAG VYQHNGEGYY SASVVDCTLS  60
LGTPSTRLCE EDEKRRRTAS YGASSSISNF WELLHTKNNN TKTPPSFDAP SFSTSNPIKP  120
ILGCSSSYGG GDSLLTRRCA NCDTTSTPLW RNGPRGPKSL CNACGIRFKK EERRTTTASG  180
NAVVGASPVA GVPYGHHNAG YNINPGNNNS GTSWAHHHTT QRAPCNYPAN EIRFMDDYGS  240
TGANNGDSDG NHGGVPFLSW RLNVADRASL VHDFTI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU1895860.0GU189586.1 Brassica napus transcription factor-like mRNA, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013596593.11e-163PREDICTED: GATA transcription factor 18-like
RefseqXP_013741296.11e-163PREDICTED: GATA transcription factor 18-like
SwissprotQ8LC791e-141GAT18_ARATH; GATA transcription factor 18
TrEMBLA0A078GU001e-163A0A078GU00_BRANA; BnaC07g31920D protein
TrEMBLA0A0D3DDV81e-163A0A0D3DDV8_BRAOL; Uncharacterized protein
STRINGBra012883.1-P1e-162(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40572556
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50870.11e-111GATA family protein