PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC8905_p2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NF-X1
Protein Properties Length: 886aa    MW: 99261.5 Da    PI: 8.314
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC8905_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X120.21.3e-06247272120
    zf-NF-X1   1 CG......kHkCqklCHeGpCppCpq 20 
                 CG      +HkC ++CH G+CppC++
  RrC8905_p2 247 CGsvldceIHKCREICHDGECPPCRE 272
                 66888888****************85 PP

2zf-NF-X116.51.8e-05360379119
    zf-NF-X1   1 CGkHkCqklCHeGpCpp.Cp 19 
                 CG H+C + CH+GpC + C+
  RrC8905_p2 360 CGYHRCPERCHRGPCLEtCR 379
                 *****************997 PP

3zf-NF-X119.32.5e-06434458119
    zf-NF-X1   1 CG......kHkCqklCHeGpCppCp 19 
                 CG      +HkCq++CH+G+C pCp
  RrC8905_p2 434 CGkklrcrNHKCQSPCHRGECAPCP 458
                 777777779***************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500898.5893155IPR001841Zinc finger, RING-type
PROSITE patternPS01359093154IPR019786Zinc finger, PHD-type, conserved site
CDDcd060088.10E-5189237No hitNo description
PfamPF014220.0081201218IPR000967Zinc finger, NF-X1-type
SMARTSM004380.023201219IPR000967Zinc finger, NF-X1-type
CDDcd060081.04E-8243291No hitNo description
PfamPF014222.6E-4247271IPR000967Zinc finger, NF-X1-type
SMARTSM004381.9E-4253272IPR000967Zinc finger, NF-X1-type
CDDcd060082.19E-6296336No hitNo description
PfamPF014220.047306324IPR000967Zinc finger, NF-X1-type
SMARTSM004380.038306325IPR000967Zinc finger, NF-X1-type
CDDcd060089.56E-9350399No hitNo description
PfamPF014220.0013360379IPR000967Zinc finger, NF-X1-type
SMARTSM004380.035360380IPR000967Zinc finger, NF-X1-type
CDDcd060088.64E-7403451No hitNo description
SMARTSM004380.055413432IPR000967Zinc finger, NF-X1-type
PfamPF014220.34415431IPR000967Zinc finger, NF-X1-type
CDDcd060087.99E-11430478No hitNo description
PfamPF014228.1E-4434458IPR000967Zinc finger, NF-X1-type
SMARTSM004387.5E-4440459IPR000967Zinc finger, NF-X1-type
SMARTSM0043876497518IPR000967Zinc finger, NF-X1-type
PfamPF014224.8507517IPR000967Zinc finger, NF-X1-type
PfamPF0142241526535IPR000967Zinc finger, NF-X1-type
SMARTSM0043865526568IPR000967Zinc finger, NF-X1-type
PfamPF014220.078608619IPR000967Zinc finger, NF-X1-type
SMARTSM004388.4608639IPR000967Zinc finger, NF-X1-type
SMARTSM004380.41649667IPR000967Zinc finger, NF-X1-type
PfamPF0142217650666IPR000967Zinc finger, NF-X1-type
SMARTSM0043820712741IPR000967Zinc finger, NF-X1-type
PfamPF014225.7714726IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009908Biological Processflower development
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042335Biological Processcuticle development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000037Biological Processregulation of stomatal complex patterning
GO:0005634Cellular Componentnucleus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 886 aa     Download sequence    Send to blast
MVGPTATSDF HRKSPPQPPP TQHQNISDSD SDSGSDPDNN NNNHQQHRHN DLSNSIFKAY  60
LDCHTSSSSS PSSIELAKIQ SFLSSSSSGA VSCLICLERI KRTDPTWSCT SSCFAVFHLY  120
CIQGWARQCL DVHAALAVTR PSTVTEPVWN CPKCRSSYQG SKIPSRYLCY CGKEQDPPAD  180
NPWILPHSCG EVCERPLSDS CGHFCLLLCH PGPCASCPKL VKAKCFCGGV EDVRRCGHKL  240
FSCGDVCGSV LDCEIHKCRE ICHDGECPPC RERAVYRCSC GKVKEERDCC ERVFRCEGSC  300
ENELNCGKHV CERGCHSGEC GLCPYQGKRS CPCGKKFYQG LSCDVAAPLC GGTCDKVLGC  360
GYHRCPERCH RGPCLETCRI VVTKSCRCGG TKKQVPCRQE LVCERRCQRM RDCEIHPCRR  420
RCCDGECPPC SEICGKKLRC RNHKCQSPCH RGECAPCPIM VSISCACGQT HIEVPCGTEK  480
NQRPPRCRKK CNITPLCRHG QNQKPHKCHY GACPPCRLTC DEEYPCGHKC NLRCHGPRPP  540
PNREFILKPT KKMLNIHPES TPGSPCPRCP ELVWRPCVGH HLAAERMMVC SDKSQFACDN  600
LCGNPLPCGN HYCSFTCHPL EIRSSSLDKR SESCEKCELR CQKERSPRCQ HPCPRRCHPE  660
DCPPCKTLVK RSCHCGAMVH AFECIEYNTL SEKDQSKARS CRGPCHRKLP NCTHLCPEIC  720
HPGQCPSPDK CGKKVVVRCK CLTLKKEWLC KDVQAAHRAA GSDPKDVQKN HFGVGLLPCD  780
SNCKSKLQMA ESVLQQRNVK EIEEKEEPSG KNATKRRKRR ERGQDVKETS RLQKLTAATK  840
KVVMVVMLIA VLVAVSYYGY KGILWLSDWM NEVEEQRQKS RRYPRI
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. May mediate E2- or E3-dependent ubiquitination. Required to gate light sensitivity during the night. Regulates the speed of the clock by acting in the feedback loop between CCA1, LHY and APRR1/TOC1. Promotes the expression of CCA1 at night but not by days. This activational effect is enhanced by interaction with ADO1/ZTL. Association with ADO1/ZTL is not leading to the degradation of NFXL2. Confers sensitivity to osmotic stress such as high salinity. Prevents H(2)O(2) production and abscisic acid accumulation. Part of a regulatory network that integrates the biosynthesis and action of abscisic acid, reactive oxygen species and cuticle components. {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:21429190, ECO:0000269|PubMed:22073231, ECO:0000269|PubMed:22516817}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation with a peak of expression at or before dawn. Not regulated by biotic and abiotic stresses, by light and nutrient conditions or upon treatment with elicitors, chemicals, abscisic acid or phytohormones. {ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:22073231}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3529480.0AK352948.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-19-B22.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018445046.10.0PREDICTED: NF-X1-type zinc finger protein NFXL2
SwissprotQ9FFK80.0NFXL2_ARATH; NF-X1-type zinc finger protein NFXL2
TrEMBLA0A0D3EHK80.0A0A0D3EHK8_BRAOL; Uncharacterized protein
TrEMBLA0A3P6E5620.0A0A3P6E562_BRAOL; Uncharacterized protein
STRINGBo9g177030.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM109542730
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05660.10.0sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors