PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC856_p6
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family SBP
Protein Properties Length: 181aa    MW: 20766.3 Da    PI: 10.1312
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC856_p6genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP135.91.2e-4262137277
                -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
        SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                Cqv++C++dl+eak+yhrrhkvCevh+ka++v+++g++qrfCqqCsrfhel efDe+krsCrrrLa+hnerrrk++
  RrC856_p6  62 CQVDRCTTDLKEAKQYHRRHKVCEVHAKASSVYLAGVKQRFCQQCSRFHELPEFDEAKRSCRRRLAGHNERRRKSS 137
                **************************************************************************87 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0375753.6E-581149IPR017238Squamosa promoter-binding protein
Gene3DG3DSA:4.10.1100.109.2E-3357123IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.23159136IPR004333Transcription factor, SBP-box
SuperFamilySSF1036128.37E-3961140IPR004333Transcription factor, SBP-box
PfamPF031101.9E-3262135IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009908Biological Processflower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MEGKKAQGQG YLKKKASIST YLVDEELENE TEGEEEVGRE EEKRKGVMIK GSSSDRVSSR  60
LCQVDRCTTD LKEAKQYHRR HKVCEVHAKA SSVYLAGVKQ RFCQQCSRFH ELPEFDEAKR  120
SCRRRLAGHN ERRRKSSGES FGEGSGGRRG LTGQVMQNQE RSRVEMTHPK SNTSFKRPQI  180
R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A8e-4560135984squamosa promoter binding protein-like 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3534391e-103AK353439.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-30-M04.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013746617.11e-106PREDICTED: squamosa promoter-binding-like protein 5
SwissprotQ9S7583e-85SPL5_ARATH; Squamosa promoter-binding-like protein 5
TrEMBLA0A078GKE91e-109A0A078GKE9_BRANA; Squamosa promoter-binding-like protein
STRINGBra038101.1-P1e-104(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM86828118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15270.15e-66squamosa promoter binding protein-like 5