PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC7393_p1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GATA
Protein Properties Length: 261aa    MW: 28655.8 Da    PI: 6.7947
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC7393_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA47.62.3e-15225259133
        GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkk 33 
                 C++Cg  +  Tp++Rrgp+g++tLCnaCGl+++ k
  RrC7393_p1 225 CRHCGIGEksTPMMRRGPEGPRTLCNACGLMWANK 259
                 ****865556**********************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132014.51378113IPR010399Tify domain
SMARTSM009797.6E-1178113IPR010399Tify domain
PfamPF062002.4E-1180112IPR010399Tify domain
PfamPF062033.9E-16148190IPR010402CCT domain
PROSITE profilePS5101713.136148190IPR010402CCT domain
SuperFamilySSF577161.14E-9218258No hitNo description
SMARTSM004011.5E-5219261IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.106.2E-13223259IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.00E-11224259No hitNo description
PROSITE patternPS003440225252IPR000679Zinc finger, GATA-type
PfamPF003202.8E-13225260IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MDDDELHGSN GRMHIGEAQE SMHHVHYGHH ALQHIHSGSG MIDDDQADGG GMSEGVETDG  60
PSHPGNITDN RGEVVDRGSE QGDQLTLSFQ GQVYVFDSVL PEKVQAVLLL LGGREVPQAL  120
PTSLGASHQN NRVLGLPGTP QRFSMPQRLA SLLRFREKRK ERNFDKKIRY TVRKQVALRM  180
QRNKGQFTSA KSNNGEAASD GSNWGTNETW AIEEGSEAQN QETSCRHCGI GEKSTPMMRR  240
GPEGPRTLCN ACGLMWANKA S
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1158174RKERNFDKKIRYTVRKQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00198DAPTransfer from AT1G51600Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1503950.0AY150395.1 Arabidopsis thaliana putative flowering protein CONSTANS (At1g51600) mRNA, complete cds.
GenBankAB1190610.0AB119061.1 Arabidopsis thaliana ZML2 mRNA for GATA-type zinc finger protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013625315.11e-171PREDICTED: GATA transcription factor 28
SwissprotQ8H1G01e-160GAT28_ARATH; GATA transcription factor 28
TrEMBLA0A0D3BMQ81e-171A0A0D3BMQ8_BRAOL; Uncharacterized protein
STRINGBra014292.1-P1e-165(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36842659
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51600.21e-161ZIM-LIKE 2