PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC7313_p1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family TCP
Protein Properties Length: 399aa    MW: 45421 Da    PI: 8.4155
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC7313_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP124.41.3e-381493092133
         TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.....................ssssasec...... 73 
                 + ++drhski T++g RdRR+Rls+++a+++F Lqd+LGfdk+skt+eWLl+qakp+i+++t++                        ++s+       
  RrC7313_p1 149 PSRTDRHSKIKTAKGTRDRRMRLSLDVAKELFGLQDMLGFDKASKTVEWLLTQAKPEIIKITSSlsnqfkhggaesqtrpaigsiH--TSSDLckigsm 245
                 5799************************************************************9999999988887776665431..22222244422 PP

         TCP  74 .eaesssssasnsssg......kaaksaakskksqksaasalnlakesrakarararertrekmrik 133
                  +   ++  +sn +s+      + +    k+k  q ++    +l+k+ ra+ar+ra++rt+ekm+++
  RrC7313_p1 246 wT---DEDGGSNTNSTetrekvDGRLMRGKRKMLQPRTPILKKLSKDARARARERAKDRTKEKMMKR 309
                 31...22222222222445555444444456666666666799*********************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.1E-40150308IPR005333Transcription factor, TCP
PROSITE profilePS5136931.724151209IPR017887Transcription factor TCP subgroup
PROSITE profilePS513709.215288305IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MNNNMSFSTI TTISEDYMLF PYNDHYSSQP LLPFSPCSSI NDISIHSNSN ILSNHLDHHC  60
QFLQTPSSFS QFEFVPDFAL LPYLHQQNNG HNDNKTITTG DRHHPSLLPL NNSIGESLVE  120
PSETITTHIE DSQRNSTVQD PKMNKVRKPS RTDRHSKIKT AKGTRDRRMR LSLDVAKELF  180
GLQDMLGFDK ASKTVEWLLT QAKPEIIKIT SSLSNQFKHG GAESQTRPAI GSIHTSSDLC  240
KIGSMWTDED GGSNTNSTET REKVDGRLMR GKRKMLQPRT PILKKLSKDA RARARERAKD  300
RTKEKMMKRI SQVNILDEEG HNHHDEIVKN NKSHVNCKSF EVTPCEEEIE QLLCKNDGFA  360
VCNESVLNKF YSSFPVPNHH RSQGTASSID QIERRRFCD
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that prevents axillary bud outgrowth and delays early axillary bud development. Indirectly required for the auxin-induced control of apical dominance. {ECO:0000269|PubMed:17307924, ECO:0000269|PubMed:17452340}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced during environmentally induced bud dormancy (planting density). Repressed transiently after shoot apical meristem (SAM) decapitation (release from apical dominance). {ECO:0000269|PubMed:17307924}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013741085.10.0transcription factor TCP18 isoform X2
SwissprotA1YKT11e-178TCP18_ARATH; Transcription factor TCP18
TrEMBLA0A3P6AA790.0A0A3P6AA79_BRACM; Uncharacterized protein
STRINGBra001710.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72692742
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18550.11e-154TCP family protein
Publications ? help Back to Top
  1. Lewis JM, et al.
    Overexpression of the maize Teosinte Branched1 gene in wheat suppresses tiller development.
    Plant Cell Rep., 2008. 27(7): p. 1217-25
    [PMID:18392625]
  2. Niwa M,Endo M,Araki T
    Florigen is involved in axillary bud development at multiple stages in Arabidopsis.
    Plant Signal Behav, 2013. 8(11): p. e27167
    [PMID:24305631]
  3. González-Grandío E,Cubas P
    Identification of gene functions associated to active and dormant buds in Arabidopsis.
    Plant Signal Behav, 2014. 9(2): p. e27994
    [PMID:24518068]
  4. Stes E, et al.
    Strigolactones as an auxiliary hormonal defence mechanism against leafy gall syndrome in Arabidopsis thaliana.
    J. Exp. Bot., 2015. 66(16): p. 5123-34
    [PMID:26136271]
  5. Yao C,Finlayson SA
    Abscisic Acid Is a General Negative Regulator of Arabidopsis Axillary Bud Growth.
    Plant Physiol., 2015. 169(1): p. 611-26
    [PMID:26149576]
  6. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]
  7. Seale M,Bennett T,Leyser O
    BRC1 expression regulates bud activation potential but is not necessary or sufficient for bud growth inhibition in Arabidopsis.
    Development, 2017. 144(9): p. 1661-1673
    [PMID:28289131]
  8. Otori K,Tamoi M,Tanabe N,Shigeoka S
    Enhancements in sucrose biosynthesis capacity affect shoot branching in Arabidopsis.
    Biosci. Biotechnol. Biochem., 2017. 81(8): p. 1470-1477
    [PMID:28471323]
  9. Lantzouni O,Klermund C,Schwechheimer C
    Largely additive effects of gibberellin and strigolactone on gene expression in Arabidopsis thaliana seedlings.
    Plant J., 2017. 92(5): p. 924-938
    [PMID:28977719]
  10. Yang Y, et al.
    The TIE1 transcriptional repressor controls shoot branching by directly repressing BRANCHED1 in Arabidopsis.
    PLoS Genet., 2018. 14(3): p. e1007296
    [PMID:29570704]