PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC6274_p1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bZIP
Protein Properties Length: 416aa    MW: 46959.6 Da    PI: 6.642
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC6274_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_131.44.1e-10131172344
                 XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNka 44 
                 ++k  rr+++NReAAr+sR+RKka +++Lee   +L++  ++
  RrC6274_p1 131 DDKTKRRLAQNREAARKSRLRKKAHVQQLEESRLKLSQLEQE 172
                 6899**************************987777766554 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.1E-7127173No hitNo description
SMARTSM003381.5E-5129189IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.507131173IPR004827Basic-leucine zipper domain
PfamPF001701.0E-6132171IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.86E-6133175No hitNo description
PROSITE patternPS000360136151IPR004827Basic-leucine zipper domain
PfamPF141443.4E-27222295IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
VLTKVSSSSS ICSLENAFQT GDSLFISRLR DELSMMMSSS SSTNTQAVPF RDMGMYEPFQ  60
QLSGWENTFN TITSNNNNNN NNQTSSTVHE VDAARTEADV NNKGNYTSLY NNNSTEAEPS  120
SNNDQDEVQI DDKTKRRLAQ NREAARKSRL RKKAHVQQLE ESRLKLSQLE QELVRARQQG  180
LCVRNPSDAT TYLGPAGTMN TGIAAFEMEY KHWLEEQRKR VGEIRTALGA HISDVELKML  240
VDVCLNHYAN LFRMKADAAK ADVFFLISGM WRTSTERFFQ WIGGFRPSEL LNVVMPYVEP  300
LTDQQLLEVR NLQQSSQQAE EALSQGLDKL QQGLVENVAV VESVNQGAQM ASAMENLQSL  360
EGFVNQADHL RKQSMQQMSK ILTTRQAARG LLALGEYFHR LRALSSLWAA RPRERS
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Required to induce the systemic acquired resistance (SAR) via the regulation of pathogenesis-related genes expression. Binding to the as-1 element of PR-1 promoter is salicylic acid-inducible and mediated by NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters. {ECO:0000269|PubMed:12897257}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9531060.0EU953106.1 Zea mays clone 1383078 transcription factor TGA4 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018447059.10.0PREDICTED: transcription factor TGA3-like isoform X3
SwissprotQ392340.0TGA3_ARATH; Transcription factor TGA3
TrEMBLA0A078HSC10.0A0A078HSC1_BRANA; BnaA08g20970D protein
STRINGBra016389.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30612766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22070.10.0TGA1A-related gene 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Gangadharan A,Sreerekha MV,Whitehill J,Ham JH,Mackey D
    The Pseudomonas syringae pv. tomato type III effector HopM1 suppresses Arabidopsis defenses independent of suppressing salicylic acid signaling and of targeting AtMIN7.
    PLoS ONE, 2013. 8(12): p. e82032
    [PMID:24324742]
  3. Herrera-Vásquez A, et al.
    Transcriptional Control of Glutaredoxin GRXC9 Expression by a Salicylic Acid-Dependent and NPR1-Independent Pathway in Arabidopsis.
    Plant Mol. Biol. Rep., 2018.
    [PMID:26696694]
  4. Fang H, et al.
    The Ca2+ /calmodulin2-binding transcription factor TGA3 elevates LCD expression and H2 S production to bolster Cr6+ tolerance in Arabidopsis.
    Plant J., 2017. 91(6): p. 1038-1050
    [PMID:28670772]
  5. Sarkar S, et al.
    Interaction of Arabidopsis TGA3 and WRKY53 transcription factors on Cestrum yellow leaf curling virus (CmYLCV) promoter mediates salicylic acid-dependent gene expression in planta.
    Planta, 2018. 247(1): p. 181-199
    [PMID:28913593]