PlantTFDB
Plant Transcription Factor Database
PlantRegMap/PlantTFDB v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC625_p2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bZIP
Protein Properties Length: 288aa    MW: 32998.9 Da    PI: 9.74
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC625_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_136.97.8e-123779450
               XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     bZIP_1  4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50
               +k  rr+++NReAAr+sR+RKka++++Lee   +L++  +    ele
  RrC625_p2 37 IKMKRRLAQNREAARKSRLRKKAYVQQLEESRLKLSQLEQ----ELE 79
               6889*************************97777766554....333 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003385.2E-43492IPR004827Basic-leucine zipper domain
PfamPF001701.3E-83777IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.0133879IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1705.1E-103879No hitNo description
SuperFamilySSF579592.38E-73979No hitNo description
PROSITE patternPS0003604156IPR004827Basic-leucine zipper domain
PfamPF141446.1E-23120172IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MNHFNNLSLG GMSTNLISMI IVQTLLLPLV DDHNNIIKMK RRLAQNREAA RKSRLRKKAY  60
VQQLEESRLK LSQLEQELEM VKQQGLRVSN SIPSGSIINT RIAKFEMEYS HWLEEQSRRS  120
CLNHYANLFR MKSDAAKADV FYLISGMWRT STERFFQWIG GFRPSELLNV VMPYLQPLTD  180
QQVLEVRNLQ QSSQQAEDAL SQGIEKLQQS LVENIAVDAV SMDYPPQMAA ALENLQALEG  240
FVNQADHLRQ QTLQQMAKIL TTRQAARGLL ALGEYLHRLR ALSSLWAA
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1 (By similarity). {ECO:0000250, ECO:0000269|PubMed:12953119}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3533841e-162AK353384.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-35-N08.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018452469.11e-174PREDICTED: transcription factor TGA7
RefseqXP_018452470.11e-174PREDICTED: transcription factor TGA7
SwissprotQ93ZE21e-154TGA7_ARATH; Transcription factor TGA7
TrEMBLM4DGM11e-176M4DGM1_BRARP; Uncharacterized protein
STRINGBra015646.1-P1e-177(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30612766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77920.11e-156bZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]