PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC604_p1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family LBD
Protein Properties Length: 177aa    MW: 19568.3 Da    PI: 6.7363
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC604_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26060.83.7e-19793176
     DUF260  1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkal..........peeeredamsslvyeAearardPvyGa 76
               +C aCk+lrrkC+++Cv+apyf+ e+ +++fa++hk+FGasn +kl+++           p  +r  ++s +++ A    + P +++
  RrC604_p1  7 PCGACKFLRRKCVEGCVFAPYFCYEEgSSNFAAIHKVFGASNFSKLISNPlfmtavkpyePSLTRLSLVSMILFTAASPKSSPSSNS 93
               7***********************9979*****************987643333333332222256666666666666666666655 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089113.8396114IPR004883Lateral organ boundaries, LOB
PfamPF031951.9E-17791IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MGGLGSPCGA CKFLRRKCVE GCVFAPYFCY EEGSSNFAAI HKVFGASNFS KLISNPLFMT  60
AVKPYEPSLT RLSLVSMILF TAASPKSSPS SNSLQAQVVL LREEASRKFP REDCMEQGKV  120
LGQDMPQDLH SWFHQVVSDS NLNQMSDVAS TSMVRNESFC SSSESLYYPE AMFPWSV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A5e-1831207122LOB family transfactor Ramosa2.1
5ly0_B5e-1831207122LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4738501e-118AB473850.1 Arabidopsis thaliana ASL17 mRNA for ASYMMETRIC LEAVES2-like 17 protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018438632.12e-93PREDICTED: LOB domain-containing protein 14-like
SwissprotQ9SJW51e-66LBD14_ARATH; LOB domain-containing protein 14
TrEMBLA0A078FFC42e-89A0A078FFC4_BRANA; BnaA05g11430D protein
TrEMBLA0A291LR542e-89A0A291LR54_BRARR; Transcription factor LBD14
STRINGBra018260.1-P5e-88(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10828359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31310.16e-67LOB domain-containing protein 14
Publications ? help Back to Top
  1. Jeon E, et al.
    LBD14/ASL17 Positively Regulates Lateral Root Formation and is Involved in ABA Response for Root Architecture in Arabidopsis.
    Plant Cell Physiol., 2017. 58(12): p. 2190-2201
    [PMID:29040694]