PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC5887_p3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family M-type_MADS
Protein Properties Length: 216aa    MW: 24544.2 Da    PI: 9.8857
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC5887_p3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF53.14.2e-171049241
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifs 41
                 ien+s r+ t+ kR+ngilKKA+EL +LC++ v vii s
  RrC5887_p3 10 YIENESSRKATYKKRKNGILKKANELATLCGVPVGVIIDS 49
                59***********************************966 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.3E-24160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006618.867147IPR002100Transcription factor, MADS-box
CDDcd002662.11E-25285No hitNo description
SuperFamilySSF554556.15E-25295IPR002100Transcription factor, MADS-box
PRINTSPR004045.1E-10323IPR002100Transcription factor, MADS-box
PfamPF003192.7E-171148IPR002100Transcription factor, MADS-box
PRINTSPR004045.1E-102338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MTRQKVKMAY IENESSRKAT YKKRKNGILK KANELATLCG VPVGVIIDSA YDLSPEVWPS  60
REEMDKVVSQ WQRLPVMDRT KKMLNQQSYL QQRISKETET CKKLTKENKE LEMKEVMFDC  120
LSGKTSPSRI EISDLRGCGN VIEQYLKNLK RRIEILSKND GASSSSVHAA ATTSAAMPIV  180
EMGSSSTAFS DMIRQQQIQS NMNQTVRGLD LNQQQW
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1145151LKNLKRR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018437451.11e-160PREDICTED: agamous-like MADS-box protein AGL80
SwissprotQ9FJK31e-54AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLA0A078GER91e-136A0A078GER9_BRANA; BnaC02g40080D protein
TrEMBLA0A0D3AXE11e-136A0A0D3AXE1_BRAOL; Uncharacterized protein
STRINGBo2g155770.11e-137(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7028415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26630.11e-69M-type_MADS family protein
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]