PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC5177_p3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family TCP
Protein Properties Length: 317aa    MW: 35483.4 Da    PI: 6.8903
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC5177_p3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP100.43.2e-31441512129
         TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssgkaaksaakskks 100
                  g+kdrhsk+ T++g+RdRR+Rls+ +a++f+dLqd+LGfd++sk++eWL+++a  +i  l   +++                        ++ + +ks
  RrC5177_p3  44 SGGKDRHSKVLTSKGLRDRRIRLSVATAIQFYDLQDRLGFDQPSKAVEWLINAASDSISGLDPIDTNFD----------------------QTLSLSKS 120
                 689**********************************************************99933333......................12233444 PP

         TCP 101 qksaasalnlak.esrakararare.rtrek 129
                 ++s++s l+l++ esr k+r+r  + r++++
  RrC5177_p3 121 STSDSSLLSLSRtESRGKERERTSKeRDNKD 151
                 4444445555555555555555333233333 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.6E-2745151IPR005333Transcription factor, TCP
PROSITE profilePS5136930.32346104IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MEDDDDIETQ QQTSRKLQRL SSDKTEMRDW SDPSSRIIRV SRASGGKDRH SKVLTSKGLR  60
DRRIRLSVAT AIQFYDLQDR LGFDQPSKAV EWLINAASDS ISGLDPIDTN FDQTLSLSKS  120
STSDSSLLSL SRTESRGKER ERTSKERDNK DLQSSFTQLL TSGFDEPNRN WTGGGSSDCF  180
NPVQLMPNSN SLNHRQEPSL NHHHHSQNQY SFVPNYNFGI SSSDSPGATG CYSSRGTLQS  240
NSQSLFLNNN NNNNINQRSL SSSSSSSSPM DSQSISFFMA PPLNNHSPQL PEAFDGRLYL  300
YYGEGNRSSD DKGKERR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A2e-1951104154Putative transcription factor PCF6
5zkt_B2e-1951104154Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). In association with ABAP1, exerts a negative role in cell proliferation in leaves, possibly by inhibiting mitotic DNA replication. Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:18818695, ECO:0000269|PubMed:25378179}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018451672.10.0PREDICTED: transcription factor TCP24-like
SwissprotQ9C7581e-128TCP24_ARATH; Transcription factor TCP24
TrEMBLA0A0D3BJ191e-176A0A0D3BJ19_BRAOL; Uncharacterized protein
STRINGBo3g147760.11e-177(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM138401726
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30210.21e-106TCP family protein
Publications ? help Back to Top
  1. Wang H,Mao Y,Yang J,He Y
    TCP24 modulates secondary cell wall thickening and anther endothecium development.
    Front Plant Sci, 2015. 6: p. 436
    [PMID:26157444]
  2. Zhu P, et al.
    Arabidopsis small nucleolar RNA monitors the efficient pre-rRNA processing during ribosome biogenesis.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(42): p. 11967-11972
    [PMID:27708161]