PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC4527_p3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family TCP
Protein Properties Length: 185aa    MW: 19870.5 Da    PI: 10.5257
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC4527_p3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP123.13.1e-3811113389
         TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg............ 88 
                 +kk + +++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++  ++s + ++++ ss+            
  RrC4527_p3  11 VKKPPAKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFStASASLRGNSATLSSSldhkpllgsspf 109
                 79*************************************************************999998874222222222222222344445555555 PP

         TCP  89 ...k 89 
                    k
  RrC4527_p3 110 ilgK 113
                 5550 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136927.8921670IPR017887Transcription factor TCP subgroup
PfamPF036342.2E-3416123IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MTNNNDGALV VKKPPAKDRH SKVDGRGRRI RMPIICAARV FQLTRELGHK SDGQTIEWLL  60
RQAEPSIIAA TGTGTTPASF STASASLRGN SATLSSSLDH KPLLGSSPFI LGKRVRADED  120
TPSGFWAAPA RPEFGQVWSF AAGGPQEMFL QQQQAAGLFI HQQQQAAMGE ASAARVGNYL  180
PVLVY
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00524DAPTransfer from AT5G23280Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018456989.11e-114PREDICTED: transcription factor TCP7-like
SwissprotQ9FMX25e-92TCP7_ARATH; Transcription factor TCP7
TrEMBLA0A0D3E1M31e-112A0A0D3E1M3_BRAOL; Uncharacterized protein
STRINGBo9g014260.11e-112(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17822685
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23280.11e-76TCP family protein