PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC401_p4
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family B3
Protein Properties Length: 309aa    MW: 35192.6 Da    PI: 9.6294
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC401_p4genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.11e-15451211796
                E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
         B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                 +p +f+++++ k e s++++l+ ++g sW++kl  +k+++   y+ ++GW +F ++ngL + + ++F+++g+++f  +v++
  RrC401_p4  45 EIPQDFLKSISAK-EFSFKMVLNLPWGSSWRIKL--SKSQSFfyYMEKNGWDQFLSDNGLGDDELLTFTHKGNMCF--NVTI 121
                69*****999755.799*****************..888777878888****************************..6555 PP

2B351.42e-16221298487
                E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
         B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                + ++s+vl +g   +pk+fae h+    e++  ++ d++g +sWev + ++k ++   +++GW + vk+ gL++gD+++F+l++ 
  RrC401_p4 221 TIKKSYVLFLG---IPKRFAEMHMP--MEETVFKIHDSKGkKSWEVMYVVSKIQS--RFSRGWPRLVKDFGLEVGDVCIFQLIKP 298
                55667777665...*********63..355689999988879******5555555..599*********************9873 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.16E-1514129IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.1E-1714125IPR015300DNA-binding pseudobarrel domain
CDDcd100171.36E-1417122No hitNo description
PROSITE profilePS5086311.15229125IPR003340B3 DNA binding domain
SMARTSM010191.7E-1236125IPR003340B3 DNA binding domain
PfamPF023623.0E-1345121IPR003340B3 DNA binding domain
SuperFamilySSF1019361.26E-20212305IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.9E-19212305IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.59215309IPR003340B3 DNA binding domain
CDDcd100171.98E-17216299No hitNo description
SMARTSM010191.7E-15218309IPR003340B3 DNA binding domain
PfamPF023621.0E-13221298IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MGTNSCFGMI MEEGNNPGFF KVLRKEDLSS QTMILFLIMT CPKREIPQDF LKSISAKEFS  60
FKMVLNLPWG SSWRIKLSKS QSFFYYMEKN GWDQFLSDNG LGDDELLTFT HKGNMCFNVT  120
IYQINCLEML GPTRSATIAS SSGNKREQGR ESLSASSYPV SETAESTVGG RLRQKRELIN  180
LGKKQVKETE KSNKSKKRKM DTNSDDSEAG TSSHVPEFTL TIKKSYVLFL GIPKRFAEMH  240
MPMEETVFKI HDSKGKKSWE VMYVVSKIQS RFSRGWPRLV KDFGLEVGDV CIFQLIKPTE  300
MILSVSNSM
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00517DAPTransfer from AT5G18090Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009121019.10.0PREDICTED: B3 domain-containing protein At5g18090
SwissprotQ9FK611e-109Y5809_ARATH; B3 domain-containing protein At5g18090
TrEMBLM4CD510.0M4CD51_BRARP; Uncharacterized protein
STRINGBra002132.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56521135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18090.11e-110B3 family protein