PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC380_p1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family LBD
Protein Properties Length: 267aa    MW: 28506.5 Da    PI: 8.2206
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC380_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260958.5e-304107199
     DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                +C++C+vlr++C++dC ++p++     p++q++++ +++k++G++ +++l++a pe+ r+ +++sl+ eA+ r+ +P+yG+vg+++++++ql+q+++e++
  RrC380_p1   4 SCNGCRVLRKGCSEDCSIRPCLgwiksPEAQANATVFLAKFYGRAGLMNLINAGPEHLRPGIFRSLLHEACGRIVNPIYGSVGLLWSGNWQLCQSAVEAV 103
                6************************************************************************************************999 PP

     DUF260  96 llke 99 
                +++e
  RrC380_p1 104 MRGE 107
                8776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381552.6E-951267IPR017414LOB domain-containing protein 10/36/41
PROSITE profilePS5089116.3133109IPR004883Lateral organ boundaries, LOB
PfamPF031959.3E-244103IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSEDCS IRPCLGWIKS PEAQANATVF LAKFYGRAGL MNLINAGPEH  60
LRPGIFRSLL HEACGRIVNP IYGSVGLLWS GNWQLCQSAV EAVMRGEPIT EMATDAATSG  120
QGPPLKMYDI RHISKDENSP AAAAAGSTDP KRGKKARRAK RVASAAAVAK PAESEGKSAG  180
GEGEASHDSS LSHQSEVVAP HEEESNISEV MTFSPTTAAA SGEIKLDLTL GLEPASRVDH  240
VVPVKKRKMG VFSTWQQESS CKTDLML
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY2088770.0AY208877.1 Brassica napus seed specific protein Bn15D17A mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018433202.10.0PREDICTED: LOB domain-containing protein 41-like
SwissprotQ9M8861e-152LBD41_ARATH; LOB domain-containing protein 41
TrEMBLD7KZI61e-153D7KZI6_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.3__191__AT3G02550.11e-154(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM77212741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.11e-141LOB domain-containing protein 41