PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC32_p14
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family TCP
Protein Properties Length: 282aa    MW: 30062.7 Da    PI: 8.527
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC32_p14genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP125.17.3e-39692352105
        TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg............ 88 
                a+kk +++++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++   + s  s+s    +            
  RrC32_p14  69 AVKKPPTKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFStA-SLSTTSSS----Pftlgkrvraeeg 163
                79**************************************************************9999977732.22222222....1222234555566 PP

        TCP  89 .......................................................kaaksaa..kskksqksaa 105
                                                                       +  +++    ++++q++++
  RrC32_p14 164 gesgpgggeltvgptmgasvmsgggfwavparqdfgqvwsfaagatpemlftqqqQ--AATLfvRQQQQQQQQQ 235
                66777888888888888888888888888888888888888777777777665321..1111112222222222 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036344.2E-3475235IPR005333Transcription factor, TCP
PROSITE profilePS5136928.28775129IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042752Biological Processregulation of circadian rhythm
GO:0043433Biological Processnegative regulation of sequence-specific DNA binding transcription factor activity
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MCPPSCLHQS FLLLSKNHFT SLNLLLLLER DREIERNLSH ADNSMENNDG AMTNGVIVEH  60
TSAKGPLNAV KKPPTKDRHS KVDGRGRRIR MPIICAARVF QLTRELGHKS DGQTIEWLLR  120
QAEPSIIAAT GTGTTPASFS TASLSTTSSS PFTLGKRVRA EEGGESGPGG GELTVGPTMG  180
ASVMSGGGFW AVPARQDFGQ VWSFAAGATP EMLFTQQQQA ATLFVRQQQQ QQQQQASAAV  240
AAMGEASAAR VGNYLPGHHL NLLASLSGGS PGSGRREEDD SR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the regulation of the circadian clock. Acts as a repressor of CCA1 by binding to its promoter. No binding to the LHY promoter. {ECO:0000269|PubMed:19286557}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00499DAPTransfer from AT5G08330Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018472268.11e-129PREDICTED: transcription factor TCP21
SwissprotQ9FTA21e-109TCP21_ARATH; Transcription factor TCP21
TrEMBLA0A0D3B0A01e-115A0A0D3B0A0_BRAOL; Uncharacterized protein
TrEMBLA0A3N6QFI31e-115A0A3N6QFI3_BRACR; Uncharacterized protein
TrEMBLA0A3P6AN881e-115A0A3P6AN88_BRAOL; Uncharacterized protein
STRINGBo3g004850.11e-116(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17822685
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08330.14e-64TCP family protein
Publications ? help Back to Top
  1. Wu JF, et al.
    LWD-TCP complex activates the morning gene CCA1 in Arabidopsis.
    Nat Commun, 2016. 7: p. 13181
    [PMID:27734958]
  2. Ng DW,Chen HH,Chen ZJ
    Heterologous protein-DNA interactions lead to biased allelic expression of circadian clock genes in interspecific hybrids.
    Sci Rep, 2017. 7: p. 45087
    [PMID:28345627]
  3. Lee CM, et al.
    Decoys Untangle Complicated Redundancy and Reveal Targets of Circadian Clock F-Box Proteins.
    Plant Physiol., 2018. 177(3): p. 1170-1186
    [PMID:29794020]