PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC32435_p1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GATA
Protein Properties Length: 172aa    MW: 18418.7 Da    PI: 9.4406
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC32435_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.39.3e-184377135
         GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                 C+ Cgt  TplWR gp g+k+LCnaCG++ rkk++
  RrC32435_p1 43 CVDCGTFRTPLWRGGPAGPKSLCNACGIKSRKKRQ 77
                 *********************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577162.42E-123778No hitNo description
SMARTSM004014.7E-123792IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.1493773IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.9E-144177IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.94E-114290No hitNo description
PfamPF003201.4E-154377IPR000679Zinc finger, GATA-type
PROSITE patternPS0034404368IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MSEGSEETKT KVDSSGELSD VDNENCSSNG SGSGSSGETK RTCVDCGTFR TPLWRGGPAG  60
PKSLCNACGI KSRKKRQAAL GIKPEKKNKR SISSDTSDLS LDDGNKTSKD DDHSSKCTSS  120
SSKRMGRFLD LGFKVPVMKR SPVEKKRLWS KLGEEERAAV LLMALSCGSV FA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009146054.12e-83PREDICTED: GATA transcription factor 17-like
SwissprotQ9LIB52e-72GAT17_ARATH; GATA transcription factor 17
TrEMBLA0A078HB791e-83A0A078HB79_BRANA; BnaA01g27530D protein
STRINGBra022184.1-P5e-83(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM126431528
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16870.15e-66GATA transcription factor 17