PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC30704_p1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family B3
Protein Properties Length: 164aa    MW: 19346.6 Da    PI: 9.2446
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC30704_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3103.88.9e-3337142199
                  EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                  f+k ltpsdv+k++rlv+pk++ae++        + + e++  l +ede+g+ W+++++y+++s++yvltkGW+++vk+++L++gD+v+F++++ +++
  RrC30704_p1  37 FEKPLTPSDVGKLNRLVIPKRHAERYfplaaavvDAV-EKGLLLCFEDEEGKPWRFRYSYWNSSQSYVLTKGWSRYVKEKQLDAGDVVIFHRHRADGG 133
                  99*****************************997555.5778*************************************************8877999 PP

                  ..EEEEE-S CS
           B3  91 elvvkvfrk 99 
                  +++++++r+
  RrC30704_p1 134 RFFIGWRRR 142
                  9******97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.8E-4131150IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.19E-3134142IPR015300DNA-binding pseudobarrel domain
CDDcd100173.09E-2736132No hitNo description
PfamPF023629.7E-3037142IPR003340B3 DNA binding domain
SMARTSM010191.8E-2337143IPR003340B3 DNA binding domain
PROSITE profilePS5086314.09937143IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MSINQYSSEF HYHSLMWQQQ QQRHHQNEVV EEKEALFEKP LTPSDVGKLN RLVIPKRHAE  60
RYFPLAAAVV DAVEKGLLLC FEDEEGKPWR FRYSYWNSSQ SYVLTKGWSR YVKEKQLDAG  120
DVVIFHRHRA DGGRFFIGWR RRGDSSSSSD SYRHLQSNAY PHAV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A4e-483414511120DNA-binding protein RAV1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0071351e-169AC007135.8 Arabidopsis thaliana chromosome 2 clone F9C22 map g6825, complete sequence.
GenBankAC0070171e-169AC007017.4 Arabidopsis thaliana chromosome 2 clone F11F19 map g6825, complete sequence.
GenBankCP0026851e-169CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
GenBankAK1175871e-169AK117587.1 Arabidopsis thaliana At2g36080 mRNA for putative RAV2-like DNA binding protein, complete cds, clone: RAFL17-23-G02.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013690753.11e-100PREDICTED: B3 domain-containing protein At2g36080
SwissprotQ8GYJ29e-93Y2608_ARATH; B3 domain-containing protein At2g36080
TrEMBLA0A0D2ZTH01e-100A0A0D2ZTH0_BRAOL; Uncharacterized protein
STRINGBra017262.1-P3e-98(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122028100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36080.21e-80B3 family protein